6YLX,8ESR,8FKQ


Conserved Protein Domain Family
Spb1_C

?
pfam07780: Spb1_C (This model is not part of the current CDD release)
Spb1 C-terminal domain
This domain is found at the C-terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis. This domain interacts with the meandering tail of Erb1 and its removal is required to form the pre-mature inter-subunit surface of the Arx1/Nog2 particle.
Statistics
?
PSSM-Id: 517888
Aligned: 97 rows
Threshold Bit Score: 161.241
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6YLX_w       630 SeefDSDYD---SEEEKNQtKkekhSRDIDIATVEAMTLAHQLALGQKNKH-DLVDEGFNRYTFRDTENLPDWFLEDEKE 705  brewer's yeast
XP_006878540 611 S---SSDDSssdGDESE----------YDTDSKAEILAYAKKML-RKKQRE-QILDDAYNRYTFDDQEGLPVWFLEDEKR 675 
XP_069147714 498 D---SSDSSsdeSD-------------DDIDTKAEILSTAKMTL-KKRPRE-EMIDDAYNRYMFHD-EGLPKWFVDEEKR 558 
NP_001353687 600 Q---NEEDSsssSDESEDD--------IDDYRKAEVLAYAKKML-RKKQRE-QILDDAYNKHMFDD-EGLPNWFVEDEKR 665 
XP_003567865 618 R---TEEDSsssSDDSDDEpE----EDLDDDTKAEVLAYAHKML-RKKQRE-QILDDAYNKYMFDD-VGLPKWFVEDEKR 687 
CAL9169388   616 E---TSDDSsssSDESEE---------MDDDSKAEILAYAKKML-RKKQRE-QILDDAYNKYMFDD-EGLPKWFADEEKQ 680 
A0EE91       756 E---DYDIDq----------------------lATNLALAKKMM-RKKTRE-QIIENSFGRDKWEDAD-LPQWFVDDEER 807  Paramecium tet...
Q23MN4       755 Y---DIDNL------------------------AETLALAKKMQ-RKRARE-DIIDSTYSRYAFEDQDNLPTWFIEDEKQ 805  Tetrahymena th...
XP_067743420 676 P---DENALpamDDRKYDSdH----EDYDAEDRAKTLALASMMVQKSKAK--DLIDASYNRYAWNDSEAIPDWFADDEEK 746 
ESS29406     778 F---QRPT----DPEEI----------------AHIQALGSLMV--QKSTRmDLLDGAYNRYAFKD-DALPEWFAEDEEA 831 
6YLX_w       706 HSKINKPITKEAAMAIKEKIKAMNARPIKKVAEAKARKRMRAVARLEKIKKKAGLINDDSDKTEKDKAEEISRLMRkVT- 784  brewer's yeast
XP_006878540 676 HNKPLKPITREEVEAMKAQFREIDARPAKKVAQAKARKKRVAMRKLESVKRKANSISDQTDISERSKTKMIDKLYK-KA- 753 
XP_069147714 559 NFQPVKPVTKEEIAAMRAQFKAIDARPAKKVAEAKARKKRAAHRKLEKFRKKANSISDQTEISEGSKRKMIEQLYR-KA- 636 
NP_001353687 666 HRQPMKPVSREEVAAMRAQFKEIDARPSKKVAEAKARKKRVAMKKLDKARQKADAIADQNDINELSKRKMIDRIYR-KA- 743 
XP_003567865 688 HTQPMKPITREEVAAMKAQFREIDARPSKKVAEAKARKKRVAMKKLEKARQKADIVADQSDINEKSKAKMIDKIYK-KA- 765 
CAL9169388   681 HCQPTKPITREEVAAMRAQFREIDARPAKKVAEAKARKKRAAMRKLEKVRQKANTIADQTDISERSKGKMIDRLYK-KA- 758 
A0EE91       808 HVFKMEPITKEEFQQEKQRLYEINSRVPKKIMEAKIRKWKKAQKKLKTAAKKAQTVFDTDGINEKTKMQQVRRIYN-KEk 886  Paramecium tet...
Q23MN4       806 HNFKHLPITKEEIQAEKERLMAINRRAPKKIIEAKIRNYKRMEKKMKKAKNKANQIMETEGISEQMKIKQVKSLYA-KE- 883  Tetrahymena th...
XP_067743420 747 HYRPQIPIPKNVLAQMKERFMEMATKPVKKVAEARGRKHRLQMKKLKSAKKQATDIANLPDMSTREKLKAIDRAMR-GAn 825 
ESS29406     832 HTRPELPVTKELMREYRQKLLDISRRPIRKVREARARKKMREQRRLQKVKSQVAAVAESTEFTEASKARAIDKIAR-KAr 910 
6YLX_w       785 -KKPkTKPKVTLVVASGR-NKGLAGRPKGVKG-----KYKMVDGVMKNEQRALRRIAK 835  brewer's yeast
XP_006878540 754 --AP-KRPNKEYQVAKKG-VPVKPGKGK-----------VLVDPRMKKDMRTHGMGKP 796 
XP_069147714 637 -AST-KKPEREYVVAKKG-VQVKIGKGK-----------VLVDPRMKKDARKHGMKKK 680 
NP_001353687 744 --MP-KKPQKEYVVAKKG-VQVRAGKGK-----------VLVDPRMKKDKRASGTGKK 786 
XP_003567865 766 -VTT-QKPKKEYVVAKKG-VQVRAGKGK-----------VLVDPRMKKDKRTSGLGKK 809 
CAL9169388   759 --MP-KKPKKEYVVAKKG-VRMKVGKGK-----------VLVDRRMKKDARSRGTGRP 801 
A0EE91       887 aNIQ-KEQERKVIVARKGqASGKLKSSR---------KVLTVDKRLKKDKRAMKAKAR 934  Paramecium tetraurelia
Q23MN4       884 -KRG-LKQEKKYIVGKKGtAPGKNSR-----------FVKHVDNRLKKDRKALSRLYT 928  Tetrahymena thermophila SB210
XP_067743420 826 ----vKKESKVYVVSTRG-GTKTAGGKKAGKG-----KVKLVDPRMKNDKRNADIRAK 873 
ESS29406     911 hAEE-KRGK-DYVVTRRV-GGGKLAQKKAGKKgggnnRVKLVDRRLKKDKRAMKAAMK 965 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap