Conserved Protein Domain Family
FCD

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pfam07729: FCD (This model is not part of the current CDD release)
FCD domain
This domain is the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain pfam00392. This domain is found in Escherichia coli NanR and DgoR that are regulators of sugar biosynthesis operons. It is also in the known structure of FadR where it binds to acyl-coA, the domain is alpha helical. This family has been named as FCD for (FadR C-terminal Domain).
Statistics
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PSSM-Id: 489148
Aligned: 144 rows
Threshold Bit Score: 37.3669
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011995449   97 DSIEVRASLEGMAARTAV--DRGWEp--gALEQLAGLVA-QSRAIVDRgkwseEIERE--WYQLNWHFHRSIMIASRNDV 169 Parvibaculum l...
jgi:Pnap_2075 121 ELMQARSAVEGAVASLAC--ANVTP----EGLARVQAAV-EAMREDIA-----MGRD---VLEHDRQFHVCIAEMSGNSV 185
Q0K4G0         89 DLYEARVTIERDCLRLAF--ERASA----ESIEELARYL-EHSKSVPA-----NTPIPq-LVELDEGFHLRIAAMAGNAE 155 Cupriavidus ne...
Q8ZNG9        156 DLIKMRVILEQGAIREAM--EKNAN----NVIVELSNIL-SKSAKINA-----ERDTQa-YLKLDHDFHYVFVKYADNKY 222 Salmonella ent...
Q8ELG8         75 DIYNLRIALETFNCQELY--HRITD----EQLKELEQNV-QATKEAAK-----TKDVTl-FATLDHEFHLAISQFVANKE 141 Oceanobacillus...
4_pfamImport    1 DLLEMRLALETAAVRRLCrtPDVVD----SLFTELNDLV-DQQRRLAE-----TNDAHa-FAVADDTFHRRIVEVAGNPI 69 
WP_012003151   95 DLLRVRGAMEELAVELTI--MNSRD----AEIFRAVEDL-KTLNLVDP--------------DQDMKFHRRFFEMSGNAV 153 Pseudothermotoga
Q183Q3         87 EIFQIRSAIEGFCTFLIT--SQYKEaravETISKLKHLLdKQKDILLG-----DKNLNs-FAEYDTLFHTTIVSYAQNTE 158 Clostridioides...
Q5WJS6         84 EVYFCRMALESFAVSEAT--KIASD----EDIHELEKLL-IRTDQAIS-----SKKEEdrIISLNELFHSTIIDYTKNLR 151 Bacillus claus...
WP_011971688   83 EVFQIREMIEPHMAKTAC--KNMSK----EYLLGLKEKF-KAIKFGLD-----SASDMa-YFDLDIEFHKYILERGNNNH 149 Alkaliphilus m...
WP_011995449  170 LRNsmRMTVIYPVLGD--AARLCPSvaacvaprhrqvpatPPAHIVDSQKEHENLLAAIRREDSAEAQRLMSDH-VLA 244 Parvibaculum lav...
jgi:Pnap_2075 186 LAS--LVGTLFDERQSplASHMRNRl-------------eGQQTWHAALSEHEQILRCLAQRDPLAAESAMRSH-IRA 247
Q0K4G0        156 LKR--MLVSLNERIRF--IRWIDM----------------ENIGRDSTQSEHAEIVHALQAHDWEKGEKCLTSH-IAL 212 Cupriavidus neca...
Q8ZNG9        223 ISQ--AHLLISARLLA--IRYRLDF---------------TAEYITSSNRGHATILDMLKNNNVEGVCNFITHH-IGS 280 Salmonella enter...
Q8ELG8        142 ITR--VLLNYQDHLRRitLRHLKK----------------DPGRVEKFYSEHVEVLDALKTGDIKCVEL-MKKHlLDS 200 Oceanobacillus i...
4_pfamImport   70 GQR--FYGSLSDRQRR--MMADAARs--------------DSARLAALIGEHARLAEAIERRDVEEFESTLLSH-LEA 128
WP_012003151  154 LMN--FFEAFNDLLSV--IWHPPFV---------------ERTFGRASLPYHKDLLQAIADRNLHSAKDAVRKI-IET 211 Pseudothermotoga
Q183Q3        159 FDK--MFNNYMYRIKK--LALDSLS---------------HEGRLETTLKEHTDIFNNIANGCIEDIYRTTLIH-MET 216 Clostridioides d...
Q5WJS6        152 LKK--QINDLKALIYY--FRILNFQ---------------GDNRANVILEQHYRIFEFIKKRDPEKAAKAMISH-LEL 209 Bacillus clausii...
WP_011971688  150 LIR--FMNEIFDLDYR--IRVMSTLd--------------RDDVEKRSSPEHFDIIDALISKDEKRIEDTIRRH-LIN 208 Alkaliphilus met...
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