Conserved Protein Domain Family
GmrSD_C

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pfam07510: GmrSD_C 
GmrSD restriction endonucleases, C-terminal domain
This entry (previously known as DUF1524) represents a domain found C-terminal in the GmrSD family of modification-dependent restriction endonucleases including SspE proteins. SspE is a dual-function protein that exerts both N-terminal NTPase and C-terminal DNA nicking nuclease activities to defend against phage infection. SspE has a phosphorothioate (PT) modification-binding preference and utilizes epigenetic PT modification to accomplish self-nonself discrimination and to coordinate its NTPase and DNA nicking activities to fight against phages. The domain represented in this entry has a DNA nicking nuclease activity and belongs to HNH nuclease superfamily.
Statistics
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PSSM-Id: 489013
Aligned: 58 rows
Threshold Bit Score: 48.6076
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Xaut_0548 482 PRDEEFERKWLDARAYVVLQPa--RARAILQ-EIEIAKRtKfHETTTLAPSLT---------VEHVMPQQWTAHWpmadg 549
Q8XIG5        439 rtTAYFENALNDIDFYSKGRMm--IPKYIFV-RLDMEKRaN-EVLDYS-DKIM---------IEHVLPRNAKEAYw---- 500 Clostridium pe...
Q5KUQ7        390 ETVKKYADNKEFEQLIRADIYhspAVKAILL-RLEQESQdQ-SVVKQFHGRIT---------VEHILPQKLKDEYw---- 454 Geobacillus ka...
WP_011962335  387 SKILELTNNEEFFKILESNLYgmsYAKAVLL-RLENSIQdD-SVFKSYSGLIS---------IEHILPQKATETYw---- 451 Flavobacterium...
CAL63313      401 IKGLKYDPKSIFAAISSKSLYgsrYAKYFLL-RLEVLSTeN-DVYKEMNAKS----------IEHVLPQNPNANSew--- 465
Q6ZEH4        426 IEKQDELIKKVLEGDIYKDKT---RRKYILL-RLDSALAeS-GQSESLKSKTLt--------IEHVLPQSLTLEWk---- 488 Synechocystis ...
Q6D0Y9        409 SIQEANDFIKEIDGNIYYLTA---RRRNYIIlRVDSFLTdK--AAKYDHSILT---------IEHVLPQTVEDGSew--- 471 Pectobacterium...
Q5YR97        407 SDEEKRLARETLDGEIYRKTE---RARYVLL-RLDEILAnN-PGATYSHSIIS---------IEHVLPQNPKQGShw--- 469 Nocardia farci...
Q4JVU8        415 SDSERADTLERLDGEIYLSTR---VRKYVLL-RLDSVLAaD-PGASYDHKIIT---------VEHVLPQNPSAGSqw--- 477 Corynebacteriu...
WP_011878154  421 KKKSSFEHDLGVLTQYDIQQY---RIRYILA-KLTQSLDeK-AWGSSPALISLdaylhkgvdIEHILPQNPSAMVk---- 491 Desulforamulus...
jgi:Xaut_0548 550 trpnadqahaalfnsieddtP-VGRIVRRNRLRESFGNLTLLTQPLNAAVSNGPYqdwvnekgeavKGKRTaLQDH---- 624
Q8XIG5        501 -------------------kD-NFSADQRRNWANKFGNLVIITGAKNTRANNKPF-----------AEKVE-QYLSk--- 545 Clostridium pe...
Q5KUQ7        455 -------------------iQ-RFTPDVHQELVHKLGNLTLLSGTKNSAAQYYSF-----------DRKKE-IYEKrn-k 501 Geobacillus ka...
WP_011962335  452 -------------------tE-RFSNQQINENVHRIGNLVLLSGRKNSQAQNYNF-----------DKKKD-VYLKns-e 498 Flavobacterium...
CAL63313      466 -------------------aK-DPDFKEHQQVVNTLGNLVLLSKSKNSSASNNDF-----------AIKKE-KYLKdr-- 511
Q6ZEH4        489 -------------------sL-GWNEENHAIWVNRLGNLALLSQKKNSSGSNLSF-----------EIKKK-EYFQkk-g 535 Synechocystis ...
Q6D0Y9        472 -------------------qAnWPDEEQREIWTHRLANLVPLTQRRNSQASNFDF-----------SRKKQ-AYFVgssg 520 Pectobacterium...
Q5YR97        470 -------------------mR-DFTPEEREYWTHRLGNLLLLNRRKNSQVRNYDF-----------AAKKS-KYFTtstg 517 Nocardia farci...
Q4JVU8        478 -------------------kQ-DFTEEEAAQWTHRLGNLLLLNRRTNSRARNYDF-----------DVKKE-KYFKsgkg 525 Corynebacteriu...
WP_011878154  492 -------------------sS-FDLPDQYQSYIGRLGNLTLLEKSINASVSNGLY-----------QEKRK-SYEK---- 535 Desulforamulus...
jgi:Xaut_0548 625 -SLLVMNREITTCDTWDEDAIIARGRNLFA 653
Q8XIG5        546 kSDFAITKEVLELSDWNMDSLKDRHESLVN 575 Clostridium perfringens
Q5KUQ7        502 kVSFDLTKEILEEKEWTKNQILSRQEKLVK 531 Geobacillus kaustophilus
WP_011962335  499 kVSFDLTKEICEKSEWNLDNFNKRQNQMIE 528 Flavobacterium psychrophilum
CAL63313      512 mSDYPRSLRITHEDSWTIAKIRATTTELSK 541
Q6ZEH4        536 sVTFPITTRILSYSTWTPAIVEQNQNFYIK 565 Synechocystis sp. PCC 6803
Q6D0Y9        521 vSSYILTTQVLNESEWIPSVLERRQLNLVE 550 Pectobacterium atrosepticum
Q5YR97        518 sAVFALTTQVLGYDEWTPAIVEKRQRELTD 547 Nocardia farcinica
Q4JVU8        526 vAVFALTTQVLGEQFWTPEVVERRQRELVG 555 Corynebacterium jeikeium K411
WP_011878154  536 -SHFVLTQAISKKPQIGINTQINRAVCILR 564 Desulforamulus reducens
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