3L0O


Conserved Protein Domain Family
Rho_N
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pfam07498: Rho_N 
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Rho termination factor, N-terminal domain
The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
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Statistics
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PSSM-Id: 429493
Aligned: 104 rows
Threshold Bit Score: 43.1365
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3L0O_A         12 ELESMNIKQLYEIAKSLGI-P----RYTSMRKRDLIFAILKAQTESTG 54  Thermotoga maritima
Q196X6        380 QLTAMKVVDLKAMATELGLtRyrgmNRTQMRKGDVINFIIETQKKQKT 427 Invertebrate iridescent virus 3
P42539        100 DYQGLTTIELKAKAKELGI-T----GISRRSKNQLIEDIKQALIEQAV 142 Acholeplasma virus L2
Q6YPI5        165 DLSKMLLHELKKLAKEHKV-P----NFHKLKKAEIVTALKKALAKKII 207 Onion yellows phytoplasma OY-M
Q180Y6         15 GLGSKTLVELREIAKELKI-K----SITTYKKNELI-EIINSKSKNEE 56  Clostridioides difficile 630
jgi:Ccel_3376   5 NLQSKTLEDLRYIAKMLGI-K----SISKYKKSELV-KLLSENAEKIK 46 
jgi:Amet_0323   5 ELATKKLEDLRQIARALGI-K----NIGKYKKSELMERIIGQEPTEDK 47 
Q6MEQ4         50 DIQRMNIDQLNQYGKKIGL-K----HLGSLTKSQMVFEIVKAISENPN 92  Candidatus Protochlamydia amoebophila UWE25
O83281        102 DLTEMGMHALRDFAVQRGIsQe---DVVVMKKSDIIFHVLKNHTENGG 146 Treponema pallidum subsp. pallidum str. Nichols
Q73MK5        130 DLTKMRMHDLRDMAIKYGVpEd---ELSLMKKQDVIYHILKNHTNQGG 174 Treponema denticola
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