1GQJ


Conserved Protein Domain Family
Glyco_hydro_67C

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pfam07477: Glyco_hydro_67C (This model is not part of the current CDD release)
Glycosyl hydrolase family 67 C-terminus
Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C terminal region of alpha-glucuronidase which is mainly alpha-helical. It wraps around the catalytic domain (pfam07488), making additional interactions both with the N-terminal domain (pfam03648) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer.
Statistics
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PSSM-Id: 517723
Aligned: 112 rows
Threshold Bit Score: 246.246
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1GQJ_A          451 GHPFVQSSWYAFGRMAWDHQISAATAADEWLRMTF-SNQPA--------FIEPVKQMMLVSREAGVNY-RSPLGLTHLYS 520  Cellvibrio ...
WP_174887920    464 GHYLAQANLYAFGRAAWSPDLSVETVTDEWVRQTF-GADET--------VGDVIKDILRRSWEACIDYeTGGLGLLHMMH 534  Halostagnic...
WP_013225967    556 GHHFAQANLYAFGRLAWDWTLDARGIAEDWVRLTW-SNRDF--------AVRTIVAMMLGSREALVSY-QTPLGVAHQFR 625  Amycolatops...
WP_012796207    556 GHHFSQANLFAFGRLAWDWTQDSADIATDWVRMTW-SNDDH--------VVDTIVRMMMGSWEALVSY-QTPLGVAHQFA 625  Saccharomon...
jgi:Palpr_1644  435 GHDFAQSNWYAFGRLAWDNKLTSEQIADEWIKLTF-RNEGAesadwnnnFLKPVKEMMLLSREAAVNY-MMPLGLHHIMS 512 
WP_013443971    464 GHQFAQANWYAFGRLAWNNSLTSAKIADEWIKQTF-SSDAK--------FVEPVKSMMLESREATVNY-MMPLGLHHLFA 533  Paludibacte...
1_pfamImport      2 GHHFAQANWYAFGRLAWNPSLTSDRIADEWLRQTF-TSQPA--------FVRPVKEMMLQSREAVVNY-MMPLGLHHQFA 71  
CDD20110        425 GHPFSQANWYAFGRLAWNPSISSEQIAHEWLVQTYgCKDEN--------FTKPVEMMMLTSREACVNY-MMPLGLHHIFK 495 
CCY02417        420 GHHYSQANWYAFGRLAWNASLSSDSIATEWLKQTF-THDTA--------FVNPMREVMASSREACVDY-MMPLGLHHIFK 489 
CCY65324        443 GHPFSQSNWYAFGRLAWNPELASDSIAREWLAQTF-TRDTA--------FINPMTAVMEASREACVDY-MMPLGLHHIFK 512 
1GQJ_A          521 Q---GD--HYGPAPwtD-DLPRADWTAvyyhrasktgIGFNRTKTGSNALAQYPEPIAKAWGDLNSVPEDLILWFHHLSW 594  Cellvibrio ...
WP_174887920    535 NgeeHLenHYYPSP--E------EWPGyhga--sedgIGVDRTESGSGYVAQYPEPIADRYGSVERCPEELLLFFHHLPW 604  Halostagnic...
WP_013225967    626 S---SD--HYGPNP--AeRLARDDWSPvyynradragLGYDRSPTGSGFTAQYFPVLAARYADIATVPENLLMWFHHVPW 698  Amycolatops...
WP_012796207    626 D---GE--HYKPYP--SqWFMKDDWSPvyynkadsvgLGYDRSPTGSNFTAQYFPVLAERYGDIESTPENLLMWFHHVPW 698  Saccharomon...
jgi:Palpr_1644  513 A---NE--HYGPGPwwApARTRKDWTPpyfhkadltgVGFDRSKTGSNAVSQYHEPLASQLNDINTCPAELLLWFHHTPW 587 
WP_013443971    534 Y---GH--HYGPEPwcDvAGARQDWMPkyyhnasvkgIGFDRSTTGSNAVLQYFSPLKEDFNDANTCPDKYILWFHFLPW 608  Paludibacte...
1_pfamImport     72 W---GH--HYGPEPwcSvPGARPDWLPsyyhkadkegIGFDRSSKGSDAVSQYPDSLRQIYNDKATCPEIYLLWFHHVPW 146 
CDD20110        496 F---DH--HYGPEPdgFiASYPLEWCPvyyhkadangIGFDRSSKGTDAVGQYPEPYRSLYDNIDTCPEEYLLWFHHVPW 570 
CCY02417        490 A---DH--HYGPEPqgFyPQYPIEWCPvyyhkadsagIGFDRTMSGSKAVSQYRHPYDSLYNNIDTCPEEYLLWFHHVGW 564 
CCY65324        513 A---DH--HYGPEPdgLyPNYPIEWCPvyyhkadslgIGFDRTRTGTDAVGQYRHPYDSIYNDINTCPEEYLLWFHHVSW 587 
1GQJ_A          595 DHRMQSGRNLWQELVHKYYQGVEQVRAMQRTWDQQEAYVDAARFA--------QVKALLQVQEREAVRWRNSCVLYFQSV 666  Cellvibrio ...
WP_174887920    605 DHELEDGTTVVQRLYDNCFAGVDEVKRLRERWHALEGRVDERRHR--------HVAERFDEQVSNAQRWRDALTAYFREY 676  Halostagnic...
WP_013225967    699 DHRMRNGRIFWDELVYRYQTGVHYVSWMRRVWDSLEPHVDARRFA--------EVRAKLAAHEADAGAWRDTCVRYWQGF 770  Amycolatops...
WP_012796207    699 DRPMANGRIFWDELVHRYQMGVQYVTWMRETWDSLKPFIDDRRWR--------EVRDKLAQHEIDAADWRDTNVQYWQEF 770  Saccharomon...
jgi:Palpr_1644  588 NFKLKTGRTLWDEMCYKYDTGVKQVRQFQKTWDKIEPYVDADRFT--------RIQNKLRAQSQNAQVWKDACLLYFQQF 659 
WP_013443971    609 DFKMKSGRILWDELCYTYDKGVQQTREFQKNWDKAERFVDPERFT--------QVQNRLRIQAHDAVWWKDACLLYFQQF 680  Paludibacte...
1_pfamImport    147 HHQMKSGRTLWGELCHAYDRGVRQVRGFQEVWDSVEPFVDARRFG--------EVQSKLKIQMRDAVWWKDACLLYFQTF 218 
CDD20110        571 SYKLSSGSTLWQELCMRYNMGVAMVETYRDFW-----HTSTKKYMkghetewqMTDSLLNVQLENAKEWRDTCLKYFQTF 645 
CCY02417        565 NHKMKDGSTLWQSLCSHYNHGVAEAQRFADTWKRMRPYVDPQRFD--------EVSRRLEEQVENAREWRDTCLGYFQTF 636 
CCY65324        588 DYKMKNGKTLWENLSAHYNRGVDEVRRFIGTWQRMRPYVDTERFM--------IVSALLDHQLENAEEWRDTCLGYFGKI 659 
1GQJ_A          667 AGRPIPANYE 676  Cellvibrio japonicus
WP_174887920    677 SGIPDERGRV 686  Halostagnicola larsenii
WP_013225967    771 NGLPVptegp 780  Amycolatopsis mediterranei
WP_012796207    771 SGREIPVDdg 780  Saccharomonospora viridis
jgi:Palpr_1644  660 SKMPIPYDIE 669 
WP_013443971    681 SKRPIPYDIE 690  Paludibacter propionicigenes
1_pfamImport    219 SGMPVPAGIE 228 
CDD20110        646 SKMPie---- 651 
CCY02417        637 SRQAIlpeq- 645 
CCY65324        660 SGKIQETATe 669 
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