7F75,8X6F


Conserved Protein Domain Family
RpoY

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pfam07288: RpoY 
RNA polymerase epsilon subunit
RNA polymerase in bacteria is a multisubunit protein complex that is essential for gene expression. This entry represents the epsilon subunit encoded by the rpoY gene. The structure of epsilon shows simple beta sheet with an alpha helix running diagonally along the back of the structure forming a beta-beta-alpha-beta fold.
Statistics
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PSSM-Id: 488873
Aligned: 35 rows
Threshold Bit Score: 85.7074
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7F75_H        2 IYKVFYQEKADEVPVREKTDSLYIEGVSERD------VRTKLKEK--KFNIEFITPVDGAFLEYEQQSENFKVLE 68  Bacillus subtilis
WP_014215302  2 IYKVYYQESKAAMPKRENTHSLYIDATNKSE------AIARVENNn-SFNVEQVELLEGNALEYEQQSASYKLVE 69  Pediococcus claussenii
Q1WU78        2 tFKVYYQPSKKSNPKRENTHVMYFEAKDEVE------ARHLVETHfpECNVEFIEALDKATLEYEKQSVNFKLTE 70  Lactobacillus salivar...
3_pfamImport  1 IFKVYYQPTKRINPRRENTEVLYLEAASEPE------ARILVESNt-DHNVEFIEQLDEAALEYEKNSPNYKITE 68 
Q03QL1        2 IYKVYYQNDQKRNPKREDTHSLYLEAPTEVE------ARALVEAHt-EHNIEFIEAIEGETLAYEQQNPNYKLTE 69  Levilactobacillus bre...
5_pfamImport  1 IWKVLYQPSKKESPRRETTHSLYVEADTEVE------AHALVEDNt-DYDIEFIEPLQGKHLEYEQSSPDYKVTE 68 
Q88VB0        2 IYKVYYQETKERNPQRETTQSLYLEAETEVA------ARTLVEDNt-DHNIEFIEPLEGNFLDYEQKNPEYHLTE 69  Lactiplantibacillus p...
B9DVR0        2 IYKIFYQETKERSPRREKTQALYLEIDAETElegrikARKLIEEKt-AYNVEYIELLSDKHLEYEKETGVFALTE 75  Streptococcus uberis ...
Q8DXT6        2 IYKVFYQETKERNPRREQTKTLYVTIDAANElegriaARKLVEENt-AYNIEFIELLSDKHLEYEKETGVFELTE 75  Streptococcus agalact...
Q8DRH6        2 IYKVFYQETKERSPRRETTRTLYLDIDASSElegritARQLVEENrpEYNIEYIELLSDKLLDYEKETGAFEITE 76  Streptococcus pneumon...
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