8IAZ


Conserved Protein Domain Family
Cas12f1-like_TNB

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pfam07282: Cas12f1-like_TNB (This model is not part of the current CDD release)
Cas12f1-like, TNB domain
This entry represents a zinc ribbon domain known as the target nucleic acid-binding (TNB) domain of CRISPR-associated endodeoxyribonuclease Cas12f1 and similar sequences found in all domains in life. This domain is also found in bacterial transposases, including putative transposes described by [pfam01385]. Some proteins containing this domain, in particular, Cas12m orthologues, albeit containing D-E-D, H-D-D and N-D-D motifs in the RuvC active site do not exhibit dsDNA nuclease activity, but efficiently bind to dsDNA targets in a PAM-dependent manner. The DNA-binding activity without cleavage seems is a common feature of the Cas12m effectors.
Statistics
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PSSM-Id: 517646
Aligned: 697 rows
Threshold Bit Score: 36.3515
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8IAZ_A        309 FYEFRTKLQAKCNENGIELRVVDRWYpSSKTCHCCGavkkdLKlsD------RI----FKC-S--CG-YVEDRAFNAALN 374 Firmicutes bac...
33_pfamImport   1 HYKFKVMLANKMGRTGGRMIECTEPY-TSKTCSRCGrin---ytiMk----qKM----FQCpH--RN-NVLDRDVNAARS 65 
WP_244919130  332 FYQFSQTLEHLCNRYGSKLVRITEEY-TSKTCTKCG-----HV--HrklgssKN----FICpN--CG-YEIPRDFNGAVG 396 Nostoc commune
YP_004894452  451 HYRFRQRLLTKCEEYGSQYYEVDESF-TSKTCCKCGnih---ktlGs----sKI----YDCiK--CK-NKIDRDVNASIC 515
RUP45077      172 HSRFRQQLVSKAEEHG-KVMFVSEAY-TSK----CRyik---nnlRg----aKT----YRCnEekCR-IIIDRDVNGARG 233
XP_020071281   59 FSLIHQRLAFKCQVKRTRLSRVTEEY-TCKVCTGCGtikd--tlsLa----nRT----FRCaL--CN-LFVDRYVNGARN 124
WP_012675019  393 YSRFNERLKQKAIIFGIKVLSVNPYK-TSRICHKCGkekkpEM---------LQ----FSC-E--CG--VYDRDYNAAVN 453 Sulfurihydroge...
WP_012963516  392 YSKFSERLAHKAQRRGIRVIEVPAFY-TSQVCHVCG-----RR--G------RAkgleFEC-E--CGsF--DRDYNASVN 452 Hydrogenobacte...
KXB06860      247 HYSFRQMLEYKCKERGIKYIDVDEAY-TSQRCSRCGelg----drNg-----gE----YKCeK--CG-FEIDSDVNGARN 309
WP_266105273  191 YGLFKQKLKSKCEYYGINYIEVDEAY-TSQTCSVCG---------Dvnr-nnRKyrglYICkK--CG-NVMNADFNGAIN 256 Thermococcus s...
8IAZ_A        375 L 375 Firmicutes bacterium AM43-11BH
33_pfamImport  66 I 66 
WP_244919130  397 I 397 Nostoc commune
YP_004894452  516 I 516
RUP45077      234 I 234
XP_020071281  125 I 125
WP_012675019  454 I 454 Sulfurihydrogenibium azorense
WP_012963516  453 I 453 Hydrogenobacter thermophilus
KXB06860      310 I 310
WP_266105273  257 I 257 Thermococcus sibiricus
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