Conserved Protein Domain Family
Gypsy

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pfam07253: Gypsy 
Gypsy protein
This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers. This family contains many members with full-length matches; however, it also includes a number of very short sequences and short matches of sequences with other unrelated domains on them, which cannot be excluded. These matches may represent remnants of once-functional genes.
Statistics
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PSSM-Id: 254125
Aligned: 4 rows
Threshold Bit Score: 559.857
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q961S8  16 AHITDYSRANYIPVIDGKVLVWEEFAYVRHSANLSEYRRVID-ETDSMLDMF-PQSHMKKLLSVDIAHLRDMLDSLSIHH 93  fruit fly
P10403  41 ARITDFSHANYIPVLDGDVLVFEQRDLLKHSSNLSEYASMID-ETQKLSESF-PHSHMRKLLEVDTDHLRTLLSVLKVHH 118 fruit fly
Q24750   2 PRITDFSHANYIPVFDGEVLVFDQRSYLRHSSNISEFVSMID-ETERLSDSF-PQSHMRKLLDVDTDHLRTLLSVLQVHH 79  Drosophila virilis
Q17319   6 IQIHDYSSSHLITIDNGYSKIKDGTLNFIHIIDIQAYRNVLEnITDMIEKSYpPENPIYPTLQHEAQQALEMLEIVEPIQ 85  Mediterranean fruit fly
Q961S8  94 --RVARSLDFLGTALKVVAGTPDAEDFEKVKFTEARLVDAHNSQIEINTKTQVRINELTDTINKLLKISKSAQIDTGHLY 171 fruit fly
P10403 119 --RIARSLDFLGTALKVVAGTPDATDLFKIKITEAQLVESNSRQIAINSETQKQINKLTDTINKVINARKGDLVDTPHLY 196 fruit fly
Q24750  80 --RFARSLDFLGTALKVVAGTPDPSDFLRIRVTETQLVEANSKQILINSETQKQINRLTDTINKIISSRKGDLVDTPHLF 157 Drosophila virilis
Q17319  86 npRIRRSFDILGTAWKYLAGSPDHDDLNMINNNLDKLITNNNNQIFINNAVKNQINKLTEITNNILQSIKNDNMIANEIA 165 Mediterranean fruit fly
Q961S8 172 ETLSTRNRIIVMELQNLMLTITLAKINVVSPNFLDHADLESIWGEep-tNTPI---REILSVASVKVLQSLNILHFIIKF 247 fruit fly
P10403 197 EALLARNRMLSTEIQNLILTITLVKSNIINPTILDHADLKPLVEQ----DTPI---VSLIEASKIRVLQSENSIHILIAY 269 fruit fly
Q24750 158 ETLLARNRILNSEIQNLVLTITLAKASIVNPTILDHTDLKSLIEQ----DTPI---VSLIEASKIKVLQSENIIHILIAY 230 Drosophila virilis
Q17319 166 LNLQNRLRLIKEEIINIKYAIQWARLGIVNTIILNKKEIETFVKEfnkeNMPFntvEEALELADINVLSNSTTILYILKI 245 Mediterranean fruit fly
Q961S8 248 PKIIMAC-NKVTILPVVHHDTVLRLKDNVVAECNREIRTVKN-CSITPGATFCQLS-----SVSSCAQELHAGVVAHCD- 319 fruit fly
P10403 270 PRVKFSC-KKVAVYPVSHQHTILRLDEDTLAECEHDTFAVTG-CTDTTHFTFCERS-----RRETCVRSLHAGNAAQCH- 341 fruit fly
Q24750 231 PKVEFRC-QKVSVYFVSHQQTILRLDEDTLAECEKDTFAVTG-CTVTTHNTFCERA-----RRETCADSLHAGNIANCH- 302 Drosophila virilis
Q17319 246 PLTTREVyNNYIIKSVIRNDVMINLKFNNVLKNKNTIYGIKNqCKKYNKVSICKQEelldlSNDFCISKLIKSQNSSCHm 325 Mediterranean fruit fly
Q961S8 320 AQQSDLHPITYVDEGIIVINDRPALVRVDNGTAIHIRGTHLITF-IESAMVNETVFFNHDMVQNRAPGVANSPVLNISMK 398 fruit fly
P10403 342 TQPSHLREINPVDDGVVIINEAAAHVSTDGSPETLIEGTYLVTF-ERTATINGSEFVNLRKTLSKQPGIVRSPLLNIVGH 420 fruit fly
Q24750 303 TQPSHLKAIMPVDDGVVVINEATAHVRTDDDAEVTVSGTFLITF-ERSATINGTEFVNLRKSLSKQPGIVRSPLLNIIGH 381 Drosophila virilis
Q17319 326 VNSHHIPRHELITPGIIFLNDYHGNIVMNDNIRI-MNGTYIINFrNASITINERTYKNFESPVMKVMPAIAQPTPIEESI 404 Mediterranean fruit fly
Q961S8 399 HEVLSLPYLHRLSEKNLEQIRNFEKDVDGYRLSQIALVAGAIFCALICIGLTWQRTTRAKKSTAQLKEVLAQIGSAEGGL 478 fruit fly
P10403 421 DPVLSIPLLHRMSNENLHSIQNLMDDVESEGSPRLWFVAGVVLNFGLIGSLALYLALRRRRASREIQRTIDTFNMTEDGH 500 fruit fly
Q24750 382 DPALSIPLLHRMNINNLLSIRDFREEVVAAGSPKFWFAIGAVLNVGLIGSFFLFLVLRKRRASMQMQKAIDKYDMPEDGH 461 Drosophila virilis
Q17319 405 TKLLSLEALSELNVNYPVEIHSLQIERTVNR-----------ISSGITLLMVIILMASAINYFHKKTKSTKPTESSSEDN 473 Mediterranean fruit fly
Q961S8 479 NLEEGIV-N 486 fruit fly
P10403 501 KLEGGVVnN 509 fruit fly
Q24750 462 HLRGGVVnN 470 Drosophila virilis
Q17319 474 QLQEIITeA 482 Mediterranean fruit fly
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