4K3B,5OR1,6IZT,9CX4


Conserved Protein Domain Family
POTRA

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pfam07244: POTRA (This model is not part of the current CDD release)
Surface antigen variable number repeat
This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Statistics
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PSSM-Id: 517629
Aligned: 228 rows
Threshold Bit Score: 30.0012
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4K3B_A  265 FRWGKVSIEGdTNEVPKAELEKLLTMKPGKWYEr--QQMTAVLGEIQNRMGSAGY-AYSEI-SVQP-Lp---NAGTKtvd 336  Neisseria gonorrhoe...
Q6MMX9   48 LIVKNIEVAGnR-KIEKDAILTKIVTKVGESYSa--QHIREDVQ----ALFNMGF-FN-DI---QVdrk-atGKDVT--- 111  Bdellovibrio bacter...
Q6ARL5   20 HRIAAISPQGnA-RVDSGAILRKINSKAGDIYDp--ATLRQDLK----AIYAMGY-FN-DV---QVdVke-tAKGKT--- 83   Desulfotalea psychr...
Q8I576  116 EMINNVIIKN-STVINAEILNELM--KQNKLLTiryKDINTIINIINNYYASNNYlFSKVLtHEVVkK----GKDKT--- 185  Plasmodium falcipar...
Q8EJN5  337 HVIEDIVFDNqS-KVSLNLLKETLELKPGQNITk--DELNEAIK----RIYALNK-FE-RV---DAeFve-gEDGRV--- 400  Shewanella oneidensis
Q5E2U2  342 LYVNKITIKNdS-LYTESMLLDRLNLEEGRSYSa--DELEEHIR----DLYVIDR-FE-RV---DYyYqeneEGTHD--- 406  Aliivibrio fischeri...
Q9KUB9  347 VQVDEIVLQNnT-HYSDLLLLNRLNLEPAQKLSt--EEIEASIE----DLYALDR-FE-LV---RYqYeqrdDQQQ---- 410  Vibrio cholerae
Q87LW2  354 RVVDEIVIVNnT-HYSDVLLTNRLELETGRKIEt--AEIEKAVE----NLYALDR-FE-LI---TYhFeevdGSNL---- 417  Vibrio parahaemolyt...
Q6LMH9  358 LYIDEVRLVNnS-QYSDQALLDRLDLHSGEKMSs--EQLAESVR----NLYALDR-FE-RI---DYsIekgdDKNI---- 421  Photobacterium prof...
Q6LKQ8  351 YYIDNIVLNNhT-LLSDPALLALLDLPVDRVISt--EELEQAVE----RLHAQDN-FS-RI---TYvIdqkdDENI---- 414  Photobacterium prof...
4K3B_A  337 FVLHIEPG 344  Neisseria gonorrhoeae FA 1090
Q6MMX9  112 LTYTVLEK 119  Bdellovibrio bacteriovorus
Q6ARL5   84 VTFNVVEK 91   Desulfotalea psychrophila
Q8I576  186 LVIYVKEC 193  Plasmodium falciparum 3D7
Q8EJN5  401 LTVTTRAK 408  Shewanella oneidensis
Q5E2U2  407 LIVEVKEK 414  Aliivibrio fischeri ES114
Q9KUB9  411 LVVDVREK 418  Vibrio cholerae
Q87LW2  418 LVFDVNEK 425  Vibrio parahaemolyticus
Q6LMH9  422 ILVDVTEK 429  Photobacterium profundum
Q6LKQ8  415 LNLDVTEK 422  Photobacterium profundum
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