Conserved Protein Domain Family
PsbW

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pfam07123: PsbW 
Photosystem II reaction centre W protein (PsbW)
This family consists of several plant specific photosystem II reaction centre W (PsbW) proteins. PsbW is a nuclear-encoded protein located in the thylakoid membrane of the chloroplast. PsbW is a core component of photosystem II but not photosystem I. This family does not appear to be related to pfam03912.
Statistics
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PSSM-Id: 399836
View PSSM: pfam07123
Aligned: 15 rows
Threshold Bit Score: 99.389
Threshold Setting Gi: 573914235
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:OSTLU_119497  22 CALSAkRYDRVVKRAITRTDKSfSHRQSRsKMPLPSDQVRRKiSICIrlv----tmsATAPQEMGKRVAG-SFALSSMVn 96  Ostreococcu...
XP_015575849       3 TIFAS-TPTSSITRANFVHKSS-SGITTSrNLDLPAMAMKRG-SVRCcmd----eqqSRSNKGMSASLIA-SICGVTMS- 73  castor bean
XP_006352753       4 SISAC-TTTSLVPRAALVHKPS-LSRPSF-VLGLPAMRKNMG-KVKCsm------erGESKLGICGSLVA-AACAATITi 72  potato
XP_006349749       3 TITAC-TTTSSVARAALVQRGS-VSRTST-ILGLPSMSKG-G-KVKCsmeg---kpkGESKLGMGESLMA-AAVAASMS- 72  potato
XP_002307627       3 TITAStTTTSSLVRAALVHKPS-LGVSCSpVLGLPAMAKK-G-RVSCsmeg--kpsvEEKCKGMSASLMA-AVCAASMS- 75  black cotto...
XP_009141078       3 SFTAS-ASTVSVARPALLLKPT-LAISAP-VLGLPPMGKRKG-GVRCsmep---kqgNVSAVGAGVSAAAtAALTAVMS- 74  field mustard
XP_006838860       3 SITAT-TGTSTLALASLISRVS-ATKQSPiILGLPTLAKK-G-GVRCsle-----akpSTNPCVGAALVA-SV--ATIS- 69  Amborella t...
XP_009398570       3 TIGTT-APTSAFVRTAVPRRPT--AVSSP-AIGLPRLGGRGG-RVKCste-------akpSAGAGASMLA-AASVMAVS- 68  wild Malays...
XP_002264508       3 TITAS-NPATSLVRASVASKGL-NGISSP-VLGLPAMAKK-G-RVRCmseekpcgsdMGSSISMGASLMA-AAAAVAASa 76  wine grape
THU61243           3 TTIAA-VPTPTIISAAVPKGTA--GISPS-VLGLPRIRTGSG-RVRCssea---kpvPFSGAGMGAALLS-AACVMGAS- 72  Balbis banana
jgi:OSTLU_119497  97 VLpALAIVDDRLNGDGTGLPLGINDGALGIILATVPLAIFGLYFIAGKqdasivAGGKDDDSGLSL 162 Ostreococcus lucimarinus ...
XP_015575849      74 SP-ALALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWSFYTVYTS------TLDDDEDSGLSL 132 castor bean
XP_006352753      73 SPtAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLVWSLYTVYTS------SLDEDEDSGMSL 132 potato
XP_006349749      73 NPvAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWSLYTVYTS------GIDDDEESGLSL 132 potato
XP_002307627      76 SP-ALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTA------TLEEDEESGLSL 134 black cottonwood
XP_009141078      75 NP-AMALVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWTFYFTYTS------SLDEDEESGLSL 133 field mustard
XP_006838860      70 SP-ALALVDERLSTEGTGLSLGISNNLLAWILFGVFGLIWALYFIYTS------TLEEDEESGLSL 128 Amborella trichopoda
XP_009398570      69 NP-VLALVDDRMSTEGTGLSLGISNNLLGWILVGVFALIWALFFVYTS------TLEEDDDSALSL 127 wild Malaysian banana
XP_002264508      77 GP-AMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFTYTA------TLEEDDESGLSL 135 wine grape
THU61243          73 CP-VLALVDERMSTEGTGLSLGISNNLLTWILVGVFALIWALYFVYTS------TLDEDDESGLSL 131 Balbis banana
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