Conserved Protein Domain Family
PsbW

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pfam07123: PsbW (This model is not part of the current CDD release)
Photosystem II reaction centre W protein (PsbW)
This family consists of several plant specific photosystem II reaction centre W (PsbW) proteins. PsbW is a nuclear-encoded protein located in the thylakoid membrane of the chloroplast. PsbW is a core component of photosystem II but not photosystem I. This family does not appear to be related to pfam03912.
Statistics
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PSSM-Id: 517569
Aligned: 14 rows
Threshold Bit Score: 100.184
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001416389  22 CALSAkRYDRVVKRAITRTDKSfSHRQSRSKMPLPSDQVRrKiSICIrlvt-----msaTAPQEMGKRVAG-SFalSSMV 95 
XP_006838860   3 SITAT-TGTSTLALASLISRVS-ATKQSPIILGLPTLAKK-G-GVRCsle------akpSTNPCVGAALVA-SV--ATIS 69 
3_pfamImport   3 SITAS-TPTSSLPRVGLRPNGGtVGTSSA-ILGLPVMAKK-G-RVTCsmkekp-svedgSLKMGMGASLMA-AAcaATMS 76 
CAG1843568     3 TIGTT-APTSAFVRTAVPRRPT--AVSSP-AIGLPRLGGRgG-RVKCste--------akpSAGAGASMLA-AAsvMAVS 68 
XP_006644788   3 TVSAA-AATTVVARAVLARPNA---------LGLPQMRARrSeRVRCsyskdgkeasspAAVKGAGASLLAmAAt----- 67 
XP_002520988   3 TIFAS-TPTSSITRANFVHKSS-SGITTSRNLDLPAMAMKrG-SVRCcmde-----qqsRSNKGMSASLIA-SIcgVTMS 73 
XP_002307627   3 TITAStTTTSSLVRAALVHKPS-LGVSCSPVLGLPAMAKK-G-RVSCsmegk---psveEKCKGMSASLMA-AVcaASMS 75 
XP_006352753   4 SISAC-TTTSLVPRAALVHKPS-LSRPSF-VLGLPAMRKNmG-KVKCsme-------rgESKLGICGSLVA-AAcaATIT 71 
XP_006349749   3 TITAC-TTTSSVARAALVQRGS-VSRTST-ILGLPSMSKG-G-KVKCsmeg----kpkgESKLGMGESLMA-AAvaASMS 72 
Q39194         3 SFTAS-ASTVSAARPALLLKPT-VAISAP-VLGLPPMGKKkG-GVRCsmet----kqgnVSVMGAGVSAAAtAAltAVMS 74  thale cress
XP_001416389  96 nVLpALAIVDDRLNGDGTGLPLGINDGALGIILATVPLAIFGLYFIAGKqdasivAGGKDDDS-GLSL 162
XP_006838860  70 -SP-ALALVDERLSTEGTGLSLGISNNLLAWILFGVFGLIWALYFIYTS------TLEEDEES-GLSL 128
3_pfamImport  77 -SP-AMALVDERMSTEGTGLPFGLSNNTLGWILFGVFGLIWALYFVYTA------TLEEDEES-GLSL 135
CAG1843568    69 -NP-VLALVDDRMSTEGTGLSLGISNNLLGWILVGVFALIWALFFVYTS------TLEEDDDS-ALSL 127
XP_006644788  68 aAP-AMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTS------DLEEDEESgGLSL 128
XP_002520988  74 -SP-ALALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWSFYTVYTS------TLDDDEDS-GLSL 132
XP_002307627  76 -SP-ALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTA------TLEEDEES-GLSL 134
XP_006352753  72 iSPtAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLVWSLYTVYTS------SLDEDEDS-GMSL 132
XP_006349749  73 -NPvAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWSLYTVYTS------GIDDDEES-GLSL 132
Q39194        75 -NP-AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTS------SLEEDEES-GLSL 133 thale cress
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