Conserved Protein Domain Family
RtcR

?
pfam06956: RtcR 
Regulator of RNA terminal phosphate cyclase
RtcR is a sigma54-dependent enhancer binding protein that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3'-terminal phosphate cyclase. This domain is found at the N-terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain pfam00158 in the central region of the protein sequence.
Statistics
?
PSSM-Id: 399735
View PSSM: pfam06956
Aligned: 35 rows
Threshold Bit Score: 286.796
Threshold Setting Gi: 123531152
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
wkYale:SALWKB2_1994   3 KKNIVFGFLGNVLDq----RGKGRKRWTRWRPTIDICNHPE-WPVYRLELIYHTQDSKLLEDIIQDIKTIAPDTQVNPIP 77  Snodgras...
Q2SLD0                3 RKNIVLSILGTTLDvvskrRGKFEKRWERWRPNVSIAQRPEhFPVDELHLLSSRKDMALAEEVAGDVKVISPDTQIAIHE 82  Hahella ...
EFO96510              5 KKTVVIGFVGSTLD-----QGKKLDRWQRWRPTMSLLMHED-LVVDELVLLHDRRNVSLIDHLRQDALEISPQTQITGHK 78  Caenorha...
WP_011799918          2 KRKVVIGFLGSQLD-----SGLGAARWDKWRPTVSLAQHDD-LQVDRLELLHDVRYLALARTVQADIAQLSPGTEVRLSE 75  Polaromo...
Q12DH4                2 KKKVVMGFLGTQLD-----SGLGSARWEKWRPTVSIAQHED-LIVDRLELMHDLRNKPLAERVRDDVVQLSPGTEVRLSE 75  Polaromo...
Q2KTJ2                3 KKTVVIGFLGSQLD-----SGLGAGRWEKWRPTVSLVQHED-RQIDRLELLHSAKHMALAQQLVRDIADASPGTLVNLVP 76  Bordetel...
EIC28549              2 KKKVVIGFIGTQLD-----SGIAASRWERWRPTVSLVLREN-LVIDKMMLLYDRNYQALADLLKQDIATVSPETEVTPVE 75  Methylom...
WP_012652972          2 KRRVAISILGTTLD-----AGKWENRWSRWRPNVALCQQPG-LFIDRLELIHDNHSQALCHRIVGDIGTVAPATDVRSNV 75  Agrobact...
WP_020950449          1 mRNVVIGFLGTQLD---------MGKRREWRPSVQLCAHPD-FPIDRLELIYDQRHYHLACTVMAAISKVSPDTEVRLVQ 70  Paracocc...
Q5LWU7                1 mRNVVIGFLGTQLD---------SGKRKRWKPSVSLCNQPD-FPVDRLELLYDQKFLRLAENVRREIEVTSPKTEVLLRQ 70  Ruegeria...
wkYale:SALWKB2_1994  78 VQIQDPWDFEEVYTCLLDIAKNYTFNNEQENYYLNITTGTHVMQICWFLLAESRFYPARLLQPSPPakpLASPENLaaep 157 Snodgras...
Q2SLD0               83 VNFSSPWELEVTYLQLRDFLSDFRFDPSA-NYFFHITTGSHIQQIVIFLLHESRLFPGKLLQTAPP-----KEGATe--- 153 Hahella ...
EFO96510             79 VNIRDPWDFSDMYGALYDFVKSYSFDTENNHYLLHITTGTHVAQICWYLLIDAHYLPAKLIQSAPTgkqQPE-------- 150 Caenorha...
WP_011799918         76 MNLANPWDFGEVYGALYDWLKTYPFELEQEDYWAHITTGTHVAQICLFLMVEARLIPGVLLQTAPP---RRQGSQAa--- 149 Polaromo...
Q12DH4               76 MNLANPWDFGEVYGALYDWVSAYAFDTEREEYWAHITTGTHVAQICLFLLVEARFIPGVLLQTAPP---RGRQAQGi--- 149 Polaromo...
Q2KTJ2               77 MEVADPWDFGEMYAALYDWARAYRFDPLQEQYWAHITTGTHVAQICMFLMVESRFIPGVLLQTVPP---KKQQIGKp--- 150 Bordetel...
EIC28549             76 MSIANPWDFGQVYAALFDLAEQYPFDIEHEEYWIHITTGTHVVQICLFLMVEARYFPGVLLQTSPP---SKKRGDAl--- 149 Methylom...
WP_012652972         76 INFRDPWDFSEVYTSLRDFARDYSFDPETEDYLVNITTGTHVAQICWFLLTEARIIPGQLLQLSPPr-dREPEQDFa--- 151 Agrobact...
WP_020950449         71 INMTDPWDFQEVYGKLYDFAADYGFDEDRERYHIHLTTGTHVAQICWFLLSESRHIPARLIQTGPP----RDDSEPs--- 143 Paracocc...
Q5LWU7               71 LNLSDPWDFQEVYGKLFDLARDYGFDEDRERYFVHLTTGTHVAQICWFLLTESRHVPAKLAQTGPP----RDEKDGp--- 143 Ruegeria...
wkYale:SALWKB2_1994 158 ianqplypsGQINIIDLNLNRYDQILTRFQQYANQATELLKSG 200 Snodgrassella alvi wkB2
Q2SLD0              154 ---------PGHQIIDLDLSKYDAIAERFRKDHLEGEDFLKSG 187 Hahella chejuensis KCTC 2396
EFO96510            151 ---------GEYRIIDLDLSRYAALTQRFEHEQAENWQQLKAn 184 Caenorhabditis remanei
WP_011799918        150 ---------GSYELIDLDLSRYDAINTRLRSARQDAVSFLKSG 183 Polaromonas naphthalenivorans
Q12DH4              150 ---------GSYELIDLDLSRYDAINARLAVAQQDAVSFLKSG 183 Polaromonas sp. JS666
Q2KTJ2              151 ---------GSYTLIDLDLSRYNVLAQRFNQAHTEALAFLKSG 184 Bordetella avium 197N
EIC28549            150 ---------GSYTLIDLDLSHYDAIAQRYARAEADAITLLKSG 183 Methylomicrobium album BG8
WP_012652972        152 ---------GTHRIIDLDLSRYDEIAKRFASEREDAASFLKSG 185 Agrobacterium
WP_020950449        144 ---------GKLDVIDLELARYNALQRRFEAAAREHSALLLGG 177 Paracoccus aminophilus
Q5LWU7              144 ---------GKLDIIDLDLSRYNALQQRFDLLAREYSDLLKGG 177 Ruegeria pomeroyi
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap