Conserved Protein Domain Family
RtcR

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pfam06956: RtcR 
Regulator of RNA terminal phosphate cyclase
RtcR is a sigma54-dependent enhancer binding protein that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3'-terminal phosphate cyclase. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain pfam00158 in the central region of the protein sequence.
Statistics
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PSSM-Id: 429211
Aligned: 32 rows
Threshold Bit Score: 288.346
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
wkYale:SALWKB2_1994   3 KKNIVFGFLGNVLD----QRGKGRKRWTRWRPTIDICNHPE-WPVYRLELIY--HTQDSKLLEDIIQDIKTIAPDTQVNP 75 
WP_011799918          2 KRKVVIGFLGSQLD-----SGLGAARWDKWRPTVSLAQHDD-LQVDRLELLH--DVRYLALARTVQADIAQLSPGTEVRL 73  Polaromo...
Q12DH4                2 KKKVVMGFLGTQLD-----SGLGSARWEKWRPTVSIAQHED-LIVDRLELMH--DLRNKPLAERVRDDVVQLSPGTEVRL 73  Polaromo...
Q2KTJ2                3 KKTVVIGFLGSQLD-----SGLGAGRWEKWRPTVSLVQHED-RQIDRLELLH--SAKHMALAQQLVRDIADASPGTLVNL 74  Bordetel...
WP_005369674          2 KKKVVIGFIGTQLD-----SGIAASRWERWRPTVSLVLREN-LVIDKMMLLY--DRNYQALADLLKQDIATVSPETEVTP 73  Methylom...
EFO96510              5 KKTVVIGFVGSTLD-----QGKKLDRWQRWRPTMSLLMHED-LVVDELVLLH--DRRNVSLIDHLRQDALEISPQTQITG 76 
Q2SLD0                3 RKNIVLSILGTTLDvvskRRGKFEKRWERWRPNVSIAQRPEhFPVDELHLLS--SRKDMALAEEVAGDVKVISPDTQIAI 80  Hahella ...
Q9HVK3                2 KRTVAIGFIGATLD----RLGKGAARWQKWRPSIGLCQQPD-LLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRL 76  Pseudomo...
WP_020950449          1 mRNVVIGFLGTQLD---------MGKRREWRPSVQLCAHPD-FPIDRLELIY--DQRHYHLACTVMAAISKVSPDTEVRL 68  Paracocc...
Q5LWU7                1 mRNVVIGFLGTQLD---------SGKRKRWKPSVSLCNQPD-FPVDRLELLY--DQKFLRLAENVRREIEVTSPKTEVLL 68  Ruegeria...
wkYale:SALWKB2_1994  76 IPVQIQDPWDFEEVYTCLLDIAKNYTFNNEQENYYLNITTGTHVMQICWFLLAESRFYPARLLQPSPPakpLASPENLAa 155
WP_011799918         74 SEMNLANPWDFGEVYGALYDWLKTYPFELEQEDYWAHITTGTHVAQICLFLMVEARLIPGVLLQTAPP---RRQGSQAA- 149 Polaromo...
Q12DH4               74 SEMNLANPWDFGEVYGALYDWVSAYAFDTEREEYWAHITTGTHVAQICLFLLVEARFIPGVLLQTAPP---RGRQAQGI- 149 Polaromo...
Q2KTJ2               75 VPMEVADPWDFGEMYAALYDWARAYRFDPLQEQYWAHITTGTHVAQICMFLMVESRFIPGVLLQTVPP---KKQQIGKP- 150 Bordetel...
WP_005369674         74 VEMSIANPWDFGQVYAALFDLAEQYPFDIEHEEYWIHITTGTHVVQICLFLMVEARYFPGVLLQTSPP---SKKRGDAL- 149 Methylom...
EFO96510             77 HKVNIRDPWDFSDMYGALYDFVKSYSFDTENNHYLLHITTGTHVAQICWYLLIDAHYLPAKLIQSAPTgkqQPE------ 150
Q2SLD0               81 HEVNFSSPWELEVTYLQLRDFLSDFRFDPSA-NYFFHITTGSHIQQIVIFLLHESRLFPGKLLQTAPP-----KEGATE- 153 Hahella ...
Q9HVK3               77 QQMELRNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSr-rKDEARHPE- 154 Pseudomo...
WP_020950449         69 VQINMTDPWDFQEVYGKLYDFAADYGFDEDRERYHIHLTTGTHVAQICWFLLSESRHIPARLIQTGPP----RDDSEPS- 143 Paracocc...
Q5LWU7               69 RQLNLSDPWDFQEVYGKLFDLARDYGFDEDRERYFVHLTTGTHVAQICWFLLTESRHVPAKLAQTGPP----RDEKDGP- 143 Ruegeria...
wkYale:SALWKB2_1994 156 epianqplypsGQINIIDLNLNRYDQILTRFQQYANQATELLKSG 200
WP_011799918        150 -----------GSYELIDLDLSRYDAINTRLRSARQDAVSFLKSG 183 Polaromonas naphthalenivorans
Q12DH4              150 -----------GSYELIDLDLSRYDAINARLAVAQQDAVSFLKSG 183 Polaromonas sp. JS666
Q2KTJ2              151 -----------GSYTLIDLDLSRYNVLAQRFNQAHTEALAFLKSG 184 Bordetella avium 197N
WP_005369674        150 -----------GSYTLIDLDLSHYDAIAQRYARAEADAITLLKSG 183 Methylomicrobium
EFO96510            151 -----------GEYRIIDLDLSRYAALTQRFEHEQAENWQQLKAn 184
Q2SLD0              154 -----------PGHQIIDLDLSKYDAIAERFRKDHLEGEDFLKSG 187 Hahella chejuensis KCTC 2396
Q9HVK3              155 -----------GSATLIDLDLSRYDRIASRFRREQEESLALLKSG 188 Pseudomonas aeruginosa
WP_020950449        144 -----------GKLDVIDLELARYNALQRRFEAAAREHSALLLGG 177 Paracoccus aminophilus
Q5LWU7              144 -----------GKLDIIDLDLSRYNALQQRFDLLAREYSDLLKGG 177 Ruegeria pomeroyi
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