Conserved Protein Domain Family
DUF1289

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pfam06945: DUF1289 
Protein of unknown function (DUF1289)
This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.
Statistics
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PSSM-Id: 399728
Aligned: 203 rows
Threshold Bit Score: 35.6031
Threshold Setting Gi: 226715239
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:HIMB59_00010630  6 SPCISVCKTDpETGYCYGCGRTNEEKSIWKeeNTSSDWKHENLEIIKCRL 55  alpha proteobacterium HIMB59
Q9KMD5              24 SPCVRHCCLD-DKDICIGCGRTIDEICRWS--SATNSEKQEILINCLARV 70  Vibrio cholerae
ABM05310             6 SPCIGSCSLD-GDKICRGCFRQIDEILQWG--KATDPQKIKILADSRARQ 52  Psychromonas ingrahamii 37
jgi:Caka_0121       13 SPCTDDCVLN-AEKICMGCYRHIDEIVDWR--HKPDSVKREILQNCTDRR 59  Coraliomargarita akajimensis DSM 45221
jgi:Sama_1179        4 SPCVARCGLN-DEDYCMGCLRHIDEIVGWS--QASDERKLEILASLPTRR 50  Shewanella amazonensis SB2B
Q084U9               3 SPCVARCGLN-ADDYCMGCFRHIDEIVIWS--QASDEQKNQICDKLADRK 49  Shewanella frigidimarina NCIMB 400
WP_011865509         3 SPCVARCGLN-EEDICMGCFRHIDEIVGWG--QADEARQAEIWDNVNRRK 49  Shewanella loihica
Q8EG69               3 SPCVARCGLN-DEDYCMGCFRHIDEIVAWR--DTSDAEQAAIIEQLAARK 49  Shewanella oneidensis
Q12PH3               3 SPCVARCGLN-EDDYCMGCYRHIDEIVTWS--SATETEQQVIWDKLPERK 49  Shewanella denitrificans OS217
WP_014146680         9 SPCVGNCCLD-DADVCLGCYRTLEEIKSWG--MVDDEARINILKNVSQRA 55  Methylomicrobium alcaliphilum
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