7AOC,7VBA


Conserved Protein Domain Family
RNA_pol_Rpa2_4

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pfam06883: RNA_pol_Rpa2_4 (This model is not part of the current CDD release)
RNA polymerase I, Rpa2 specific domain
This domain is found between domain 3 (pfam04565) and domain 5 (pfam04565), but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability.
Statistics
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PSSM-Id: 517462
Aligned: 111 rows
Threshold Bit Score: 55.1824
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7AOC_B        568 VGWCTYKLAKHVADVLRLMKIEyavklrngtatE-PAKVPLDLEIGYVPPSH---NGQYPGLYLFSNPARMVR 636  Schizosaccharomyces ...
Q54BM1        555 LGKIEPKAGEEMVKMLRYLRSM-----------GnEPSIPKTMEISYAPPTNv-eNGQYSGISLFTTGARFMR 615  Dictyostelium discoi...
EFX65117      573 LGRVGDRSATRFVDKLRMLKVR-----------G-AENVPKTLEIAFVPRTl---NGQYPGIYLFTASARMMR 630 
XP_002422580  567 IGYVADTNAQNLVQSLRVLKIE-----------G-NV-VPNTLEIVLVPKKDs--ESQYPGIFLFTGPNRLMR 624 
3_pfamImport    1 IGYVPETLTALFIRKLRTLKVK-----------G--KQIPETTEIVWLQKKEeniLGQFPGLFLFTGNARMMR 60  
ETN58440      562 LGRIARSSAPRVVQKLRLLKID-----------G-ET-IPSATEIAFVPWRE---GGQYPGIFMFVGPARMMR 618 
1_pfamImport    1 AGRIPKAVVGQAVQQLRMLKIG-----------G-EE-IPEATEIVFIPSKE---GGQYPGLYIFVGAARMMR 57  
XP_011493248  560 IGHIPKNIAGVAVHKLRLLKIE-----------G-QE-IPEATEIALVPSKE---GGQYPGLYIFVGVARMMR 616 
2_pfamImport    1 IGLIDDNIIARVTDKLRLLKIK-----------G-QE-VPYMMEIALVPKKTv--PAQYPGLYLFTSPARMMR 58  
EFN88780      558 IGLIEDNIINRVTCKLRELKVN-----------G-EE-VPNTLEIALVPKKTi--PAQYPGLYLFTNAARMMR 615 
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