7AOC


Conserved Protein Domain Family
RNA_pol_Rpa2_4

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pfam06883: RNA_pol_Rpa2_4 
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RNA polymerase I, Rpa2 specific domain
This domain is found between domain 3 (pfam04565) and domain 5 (pfam04565), but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability.
Statistics
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PSSM-Id: 429172
Aligned: 119 rows
Threshold Bit Score: 55.1786
Threshold Setting Gi: 159117422
Created: 27-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7AOC_B        568 VGWCTYK-LAKHVADVLRLMKIEyavklrngtatepAKVPLDLEIGYVPPS-Hn--GQYPGLYLFSNPARMVR 636 
KJE97698      553 IGKLAPE-NAAQITAHFRYRKAQg-----------hKDLPRYMESALVLPS-Er--GQFPGLFIFTSLCRMVR 610  Capsaspora owczarzak...
XP_001708931  577 LGYLDTNeRAIQLVACIRAAKVK-------------SIIFPYTEVVFIEKGnKd--HLFPGIYMNTSMGRFYR 634  Giardia intestinalis
XP_015781158  578 IGYVNEA-KAKSFVQKIRVLKTSe-----------dQSTPSVIEIGFIPKT-Ga-aTQYPGIFIFTNPARMLR 636  two-spotted spider mite
XP_002131003  571 IGWMPVH-QGHQAVNVIRCKKARg-----------qDNVPITLEICLIEYTgKp--TQYPGLYLMSQEARMVR 629  vase tunicate
A0E2A7        541 IGYLNSS-LLPTFEHTLRVYKSN-------------GTIKETTEVACLPRQeNk-sPLFPGIYINTTVARLMR 598  Paramecium tetraurelia
KRY27727      542 IGVIGEE-NVQQAIQILRKEKSSg------------VFLSIFTEICFFSRKtFs--MHYPGLFIFTEFGRFMR 599  Trichinella spiralis
EFC38462      477 IGKVSHD-KLQNLADQLRYCKVSg-----------kYGLPKFMEIACQPKYsAmdiPYLPQLNIFTDIARAVR 537  Naegleria gruberi
Q22C62        574 IGYIESK-NAQTFCQSLKYLKIMqd---------ptRLIPADLEIGYVPKLnLekqNIFPGIFLHTNEARFVR 636  Tetrahymena thermoph...
XP_004032431  500 IGYIENE-CAEQFCQSLKYLKIVqd---------qeRLVSADLEIGLIRKEiQdkqILFAGVYLYTNEGRFVR 562  Ichthyophthirius mul...
KJE97698      553 IGKLAPE-NAAQITAHFRYRKAQg-----------hKDLPRYMESALVLPS-Er--GQFPGLFIFTSLCRMVR 610  Capsaspora owczarzak...
XP_001708931  577 LGYLDTNeRAIQLVACIRAAKVK-------------SIIFPYTEVVFIEKGnKd--HLFPGIYMNTSMGRFYR 634  Giardia intestinalis
XP_015781158  578 IGYVNEA-KAKSFVQKIRVLKTSe-----------dQSTPSVIEIGFIPKT-Ga-aTQYPGIFIFTNPARMLR 636  two-spotted spider mite
XP_002131003  571 IGWMPVH-QGHQAVNVIRCKKARg-----------qDNVPITLEICLIEYTgKp--TQYPGLYLMSQEARMVR 629  vase tunicate
A0E2A7        541 IGYLNSS-LLPTFEHTLRVYKSN-------------GTIKETTEVACLPRQeNk-sPLFPGIYINTTVARLMR 598  Paramecium tetraurelia
KRY27727      542 IGVIGEE-NVQQAIQILRKEKSSg------------VFLSIFTEICFFSRKtFs--MHYPGLFIFTEFGRFMR 599  Trichinella spiralis
EFC38462      477 IGKVSHD-KLQNLADQLRYCKVSg-----------kYGLPKFMEIACQPKYsAmdiPYLPQLNIFTDIARAVR 537  Naegleria gruberi
Q22C62        574 IGYIESK-NAQTFCQSLKYLKIMqd---------ptRLIPADLEIGYVPKLnLekqNIFPGIFLHTNEARFVR 636  Tetrahymena thermoph...
XP_004032431  500 IGYIENE-CAEQFCQSLKYLKIVqd---------qeRLVSADLEIGLIRKEiQdkqILFAGVYLYTNEGRFVR 562  Ichthyophthirius mul...
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