4OHW


Conserved Protein Domain Family
Clp1

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pfam06807: Clp1 (This model is not part of the current CDD release)
Pre-mRNA cleavage complex II protein Clp1
This family consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA.
Statistics
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PSSM-Id: 517428
Aligned: 122 rows
Threshold Bit Score: 70.619
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4OHW_A       316 LYPFTFDVSFDD--VTLCK----------IGA--E-QLPDSCLPFG-M----------------------------EVEN 351 Caenorhabditis ...
XP_024321741 339 LSPHTQTVDFSA--VTVYKvheq---sgmM---------SSFLPGGeEev------------------------------ 374
XP_008087277 348 LSPHTQNVSFDE--ATIYRirep---nktD---------TSFLPGGeAd---------------------------AIFS 386
CCU74691     351 LSPHTQLINFEE--ALVYKik--------------dANCQYFAPGGeEsi------------------------------ 384
XP_007291148 343 LSPHTQQLNFAD--LFIYKil--------------gADAQSFMPGGeEeg------------------------------ 376
EMR62882     407 LSPFTQQVDFDA--LSVWRviea---pssS-------SPSSGAPAKdEddsydpditststtftspttfaatatatATAT 474
ERT03215     409 LSPYTQQVDADA--LTVLRlppg---dnaA-------RANGAGGAGhDdddgdag--------------vddgpdeEGAI 462
KLU93099      78 LSPSTQQVAFDD--VHIYM------------------------PAGdGpatt--------------------tvvkADKA 111
XP_002567669 378 LSPHAQQLDFASlpVYNYTvssaddededEYDpsQlGTGASFLPGGdG----------------------------MLPP 429
A6S936       343 LSPHTQVVNFDE--LSIYKvkea---hsmQ---------SAFLPGGeEev------------------------------ 378 Botrytis cinere...
4OHW_A       352 HE--TKLV-IMEPSADIKHHLFAFSRSTKAD--ENVLKSPVFGFCLVTEVDLEKRTMSILCPQ-RTIPSKVLVFSDiTHL 425 Caenorhabditis ...
XP_024321741 375 --esPIFDrV-EPSSQMLHCVMAVMYAGTHDslEVIRDASVMGFVYVAEVDDKKRRLRVLAPLsGRIGDRPLVWGS--WP 449
XP_008087277 387 TS--QIYDkS-DPSPEMLHCVFAIMHATLRDsqETIRDASVMGFVYVAGVDEKKRVIKVLAPLnTRISDRPMVWGS--WP 461
CCU74691     385 --dqEIFEkV-EPGPRMLHCILAVMYASVVDpqETVRDASVMGFVYVSEVDEKKRKLKLLAPMnSRMSDRPLVWGN--WP 459
XP_007291148 377 --ekQIYEkV-DPNASMLYCTLAILYASTTDsqDTIRDASVMGFIFVTEVDEKRSRIKVLAPMnTKITDRPFIWGS--WP 451
EMR62882     475 TT--PDIEkV-EPSQPMQNCTLAVVYANPNDpaDAVRDANVMGFVYVADVDEKRRRLRVLAPVsARLGDRPLLWGL--WP 549
ERT03215     463 GE--HNLEkV-DAGPSLAHWTLAVMNAGLHDppDVIQHATVLGFVYVAEVDAERRKVRVLAPLsGRLGDRPLVFGR--WP 537
KLU93099     112 DDgaAPLEkLTQPLPELAHWTLTMMNAAPTDppDKIRFASVAGFVYVAAVDRDRRRMKILAPVsGRLGDRPLVWGR--WP 189
XP_002567669 430 AP------------SALANTLLAVTHAPATAspAEVRDASIMGFLYVADVDADKGKIRVLAPVgGRMPPRAIIWAK-RWP 496
A6S936       379 --epTQYEkV-EPTPSMLHCIFAVMHASTRDsqDTIRDASVMGFVYVAEVDEKKKRMKILAPLnTRVTDRPLIWGS--WP 453 Botrytis cinere...
4OHW_A       426 D 426 Caenorhabditis elegans
XP_024321741 450 E 450
XP_008087277 462 E 462
CCU74691     460 E 460
XP_007291148 452 E 452
EMR62882     550 E 550
ERT03215     538 E 538
KLU93099     190 E 190
XP_002567669 497 g 497
A6S936       454 E 454 Botrytis cinerea B05.10
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