Conserved Protein Domain Family
DUF1230

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pfam06799: DUF1230 
Protein of unknown function (DUF1230)
This family consists of several hypothetical plant and photosynthetic bacterial proteins of around 160 residues in length. The function of this family is unknown although looking at the species distribution the protein may play a part in photosynthesis.
Statistics
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PSSM-Id: 399646
View PSSM: pfam06799
Aligned: 58 rows
Threshold Bit Score: 146.563
Threshold Setting Gi: 81664554
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002286454   1 VPVDQRPSNEYLNLMRQPTFPW------ASQESgdLGLGIRL-----GVIYVAFFGLVCyPISGA------------TW- 56  Thalassiosira p...
XP_005847332  71 VPREQRPVNELQQLKDTPLLAW------ATLDL--PQYAQRL-----LILYGGVFLLLGgPIAAQ------------TF- 124 Chlorella varia...
EFJ41307      54 VPKDQRPVNQLAELKQDPLYSWmncgtaHSASS--AMLTYRLprvepTRVWVV-------RVTCP------------TFr 112 Volvox carteri ...
Q9FN15        86 VPSDQRPVNEYSSLKEGMLYSW------GELGP--SEFFIRL-----GGLWLVTFTVLGvPVAAA------------SF- 139 thale cress
EFJ29764       6 VPWDQLPINEFNSLQESQYFSW------AVESV--WLYSMKI-----GGIAACCTVFLGwPVASL------------SV- 59  Selaginella moe...
XP_006858288  65 VPLEQQPVREYEALASSALFSW------AAGDV--RHYGRRL-----AAVSLGFAVLLGwPVARFgamlhhnnlglnSL- 130 Amborella trich...
XP_003544530  60 VPHEQQPINEYQSLSTSFPFSW------AAGDV--VEYASRL-----FVTGASFALLLGlPVAWFg-----------SA- 114 soybean
EEF45789      67 VPLEQQPINEYQSLSTSFPFSW------PASNI--VEYCSRL-----FVTGASFALFIGlPVAWFg-----------SV- 121 castor bean
ACI88740      63 VPPEQQPINEYQSLSTSFPFSW------ASGDL--IEYSTRL-----FLTGASFAFFVGlPVSWFg-----------SI- 117 thale cress
XP_009410782  60 VPLDQQPVNEYQSLSTSLPFSW------ATADL--RLYSSRL-----ALTGASFALIVGlPVSAFg-----------TG- 114 wild Malaysian ...
XP_002286454  57 ----------VDEGYELQKISASNVGAMSVLLVLLLRLYSGWGYIGSRLKSKVIEYEETGWYDGDFEEKSEAEKARDLFL 126 Thalassiosira p...
XP_005847332 125 ----------DPLDQPLEFFLSGSTGSLLVVAVAALRIFLGWKYVGDRLLTASLEYEETGWYDGQVFVKPPEVLTRDRLL 194 Chlorella varia...
EFJ41307     113 vpptrvrpgpHPV-QPLEWFLSGTTGALVVVAVVVIRIYLGWSYVGDRLLSAAVPYEETGWYDGEMFVKPPEVLMRDRLL 191 Volvox carteri ...
Q9FN15       140 ----------NPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEVLARDRLL 209 thale cress
EFJ29764      60 ----------NPESDLLKCTLGALSGGLMGATLAALRLYLGWAHIGD--------HEETGWYDGQTWIKPPEVLARDRLV 121 Selaginella moe...
XP_006858288 131 ----------DSEREVMSSLVGSACVGLFAANLAALRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKPPEILARDRLL 200 Amborella trich...
XP_003544530 115 ----------GAQAEPAKRLLCAASSGLFAVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLL 184 soybean
EEF45789     122 ----------RPESEPFKPIIAAASSGILLVSLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLL 191 castor bean
ACI88740     118 ----------GPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVKTPEVLARDRLL 187 thale cress
XP_009410782 115 ----------SLSDP--RCALGVVSAGLLAVTLAVLRMYLGWAYIGNRLLSATVEYEETGWYDGQIWVKTPEVLARDRLL 182 wild Malaysian ...
XP_002286454 127 YRSNVAPVEERLKKFTLI 144 Thalassiosira pseudonana CCMP1335
XP_005847332 195 GTYEVKPVLARLRTTLQG 212 Chlorella variabilis
EFJ41307     192 GTYEVKPVLSKLRTTLLg 209 Volvox carteri f. nagariensis
Q9FN15       210 GSYKVKPVIKMLKQTLIg 227 thale cress
EFJ29764     122 GAYTVKPALSRVRVTLIG 139 Selaginella moellendorffii
XP_006858288 201 GSYSVKPILNRVKLTLMG 218 Amborella trichopoda
XP_003544530 185 GSFFVKPVLGRLKITLVS 202 soybean
EEF45789     192 GSFSVKPVLSRLKYTLLT 209 castor bean
ACI88740     188 GSFSVKPVLARLKNTLVI 205 thale cress
XP_009410782 183 GSFSVKPVLSRVKLTLIG 200 wild Malaysian banana
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