Conserved Protein Domain Family
LtrA

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pfam06772: LtrA (This model is not part of the current CDD release)
Bacterial low temperature requirement A protein (LtrA)
This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.
Statistics
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PSSM-Id: 517415
Aligned: 86 rows
Threshold Bit Score: 123.193
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_023360745   19 WAELFFDLVAVAGVAALAHV-----LGPDLDAA----ALG-LYALMFLALWLSWTTFMLYGNVAAGQTRV--LRLMVGMF 86  Actinoplanes f...
WP_012692935   32 WLELFFDLIFVVAFDQLAKR-----LGDSPQLE----NLG-EFGLMFTAVWWAWAGNTMLAARYGNETRAyrWGTVAQLV 101 Deinococcus de...
Q9RUV8         42 WLELFFDLIFVVAFDQLAKR-----LGANASLA----NIG-IFLLLFTAVWWAWASNSTFAARYGNERRVyrWDTVAELI 111 Deinococcus ra...
WP_014214916   23 WLEVFSDLIYVVIFHQLTVG-----LMEGHNFE----NYG-KFLILFLLIYWTWSDFNFYFDSHGDTSLRttTLSVLQMA 92  Pediococcus cl...
WP_007747262   22 WLELFYDLIFSVVLERLTSG-----LVADFSWP----RFF-NASVLFFWFFWSWHETSGYFDNHGNDSILnvLIINVQLI 91  Oenococcus kit...
WP_013370757    8 WLELFYDLLFVAAVSKATHV-----LLHVEHGSagwhNLE-KFILIFIPIWWAWVGQTVYNNRFGQDSIThrIFMILQLF 81  Paenibacillus ...
10_pfamImport   4 WLELFYDLVFVVAISSTSHL-----LTTVNQQPrhffAITgEYLLMIVPMWWAWAGQTMFLNRYRLILKNphYYTFIQMF 78 
Q8Y9X8          8 WLELFFDLIFVTAVASTTHL-----LLSVDNHPdktaAYFgEYLLMVTPMFWAWVGQTMFFNRFGEKIKWpeLYMLSQMF 82  Listeria monoc...
Q8DTT2         11 NYELFFDLTVVLAIGQLTSAihlnhIGLQ--------EVL-AFITTNIIIFNIWHNEVLYFNKYGDs----rLQDIYTII 77  Streptococcus ...
WP_012903116   12 FSELFYDLVFVFAISKATAL-----IHPLHDGVvawdSLL-DFFISVMVIINAWMIQTIYTNRYGTNSLFnmVIMFTNMG 85  Rothia mucilag...
WP_023360745   87 GLGVMAASVPGVAHTVLdhdgd-slplNVFAIAYIATRVYGARSWQR----------------GAVLLDFPVVQYSAGLL 149 Actinoplanes f...
WP_012692935  102 SMGMLALTLRGDLKDTG----------MAFALAYGTNRVLQVVMHFAlare---------vpgGAPFAQQSSAPLALAAG 162 Deinococcus de...
Q9RUV8        112 SVALLAVIIRGDLEQTG----------TYFAVAFGINRLLNAGLHRWadhk---------tpaDVTFSRRTSAVVGTAGL 172 Deinococcus ra...
WP_014214916   93 AISFSALYIPEFFHGHY----------TSFILAFALNQLMITYLWWGsghfdp-----dhhqyAHDHNRQY----WISLV 153 Pediococcus cl...
WP_007747262   92 LAGIAALFIPDAIAGNY----------TNILIAFVPMELLLIAVWYIighfdp-----thgpaSRAWATVY----SFALL 152 Oenococcus kit...
WP_013370757   82 FVLIMTASLNVDFDAYY----------ASFFVGYIGLRGLTVVQYLLtapket----ahkqetARFFGTYLWVGIVISSC 147 Paenibacillus ...
10_pfamImport  79 FVMLMTASFNLNFNETY----------FTFLLGFVGIRVLTIVQYHSvkrcidn---padkkiIQLLTNYFTFSLVLSST 145
Q8Y9X8         83 FLILMTASFDLTFSNTY----------YTFLIGYLGIRFITVIQYFViskqlt----gnaqkvALLLGSVFLLGVLTTAT 148 Listeria monoc...
Q8DTT2         78 ALMFIVGNISLNFSLNIkgyyagnpqlMLFNFLLMLAYAFIALQYFLkgkklgfshniklsilSQLSYSLPLAGLAL--- 154 Streptococcus ...
WP_012903116   86 LMLFISNMIGYNWQQWF----------YYTCWAVGTLTLTLFFQYLVeffrks------tdntdRKSIKGFLWLTGLQSL 149 Rothia mucilag...
WP_023360745  150 PWLASLWVDEH--WKLVLWAVGVGLDLllivvlsgsr---mlqrvqaylAAPErtrrrsrgrsdgsgpvihgvsVDPVHL 224 Actinoplanes f...
WP_012692935  163 VWLISAWLPGGstLQILLWCAALLADM----------------------IIPVviqarvg--------nahsslPHEGHL 212 Deinococcus de...
Q9RUV8        173 LWLGSALLPSGsgAQLAVWGAALLLDV----------------------LHPLlgrrd-----------gqqvlPHQGHL 219 Deinococcus ra...
WP_014214916  154 IQLVAAIIPNSk-IQFALIIISIISNYsagyfarkaaqlefqkrgiefeISPA--------------------------L 206 Pediococcus cl...
WP_007747262  153 LLHIGLFAPTA--GKFVIILATLLINYlvv-----------------ffANPRlrreye---------nthmpfVLKDSL 204 Oenococcus kit...
WP_013370757  148 SLFFDSW------VRYLILYTGIAVDI----------------------LVPLigrkk-----------lvitpIHTEHL 188 Paenibacillus ...
10_pfamImport 146 SLFFTGF------PRYFILFFGIFLDI----------------------VMPLinrkt-----------lrdspVDVSHL 186
Q8Y9X8        149 SVFFEGF------ARYLVMYLGIAVDI----------------------ILPLflakt-----------lrkvpVDFPHL 189 Listeria monoc...
Q8DTT2        155 -----GL------LPLNIWTALIYLLPn---------------------LLPIfsrkf-----------ynhqlLNFPHI 191 Streptococcus ...
WP_012903116  150 GVYLAALFPIY--VGVYIFIASILLTF----------------------IVPIflmtk-----------dehfqVNLPHL 194 Rothia mucilag...
WP_023360745  225 AERLGLFVIIVLGESVVQivaaagethFDLGVLAAA---LASFILLAGMFGL-----SVVFGHAGLPhlragRIPSRAAL 296 Actinoplanes f...
WP_012692935  213 PERVGLLQIIALGAIVTEvvngsrqqeMNLVTLAPA---LSAILLTVALWRLyfdqaRTLPLLGAHVeg--qVQRMQAWL 287 Deinococcus de...
Q9RUV8        220 SERVGLLQIIALGEIITEvvngsrqqtLGWTTLLPA---FFSILVAVSLWRLyfdqaRALPLLQAHTrg--qTLGTLPWF 294 Deinococcus ra...
WP_014214916  207 SERYSQLMIIVMGESLAElidsmsdvhKTVSMLSLFftsAFITLLIYLLFYInf----------------dhILIKKGYG 270 Pediococcus cl...
WP_007747262  205 IERYGLMTMIALGEVIVGlyeai----ghpvTMLGLtefIMSIVLVALVTAVyy----------------------qvIG 258 Oenococcus kit...
WP_013370757  189 LERFAQFTLILLGESVISilsvlqsdhFTVSSIVFA---ALTFVLVIAIWWQyfeniEKRVDKSKQTagq-------tii 258 Paenibacillus ...
10_pfamImport 187 AERLGLFTLICFGETVVAliailngqtMDVSTLLYV---IVAFVAISLMWSSyyahlDWIIDKKQLTngq-------lll 256
Q8Y9X8        190 AERFGLFVIITFGESIVAittilvghtLDLYTICYT---LLGFLIICTLWASyfysfEKIVDHHKVThgq-------fli 259 Listeria monoc...
Q8DTT2        192 VERLHLVTLLTFGESVIAiiktypl-------kdqpltgFMLFFGMATLFVFymgqtFLNINHHQETtas-------ilf 257 Streptococcus ...
WP_012903116  195 IERVSLLVIITFGEMVIGlvdfftv-------enfsiysVLNFVIMLSLFLFyfgefDHAIDEGSNQkgv-------fii 260 Rothia mucilag...
WP_023360745  297 GLHCLVTGVVATIAVPLSLVVehgsDP----LPDQARWLL-CGAVAAYFTLGVVTG------------VASHSSDRPRTI 359 Actinoplanes f...
WP_012692935  288 YGHLPFTLSVVMLGVGLGHGL----SGvdakKDAVNQQFV-AWPLASAFLTLCFLRwns-------rrVARQRGMDRSLM 355 Deinococcus de...
Q9RUV8        295 YGHLPLTLSIIMLSVGLGQGI----GSgtaeEVATQQQFV-VWPLAGALLTLAFLRans-------rrVAGERGADRSLV 362 Deinococcus ra...
WP_014214916  271 WMYLYRQSFVVITLNSILEIL--------------------FIHLILFEPSHLI--------------QTALAISTITMV 316 Pediococcus cl...
WP_007747262  259 ELHVQMASSIQVMAVRWLFLL------------DIYAVML-FGVFLIFVLEKDQLT------------QRLWLSFLLFAS 313 Oenococcus kit...
WP_013370757  259 YGHLFIYLSLSMLAASIQLLFlg------qaAYTFVLCFT-FASVFIYFLSVLLVFhqy------rlsHLKPRLRVILFL 325 Paenibacillus ...
10_pfamImport 257 YSNLFMLISITLFAAALHLGHhp-------vLPFRLINLLfIFSFLLFYSTKHFIFiyhp-----rkkVAKKTVRKIIGL 324
Q8Y9X8        260 YGHFFIIVSVMLLAVNLHLLFeg------hlQRDVLLLLL-FSSVAVFFISKQFVFaah------kkaEVSFSFWKDALL 326 Listeria monoc...
Q8DTT2        258 YAHLPIFAGINIFTVGIEFLAesh---------------haNIGFILFLAGIISFY------------LGVLATSRYNK- 309 Streptococcus ...
WP_012903116  261 YSHYPIFIGLMLMTVSMGYLLnp------eaNLLVAIIFF-YIGIGLFQAAVLANGpynknylryprsYYCVQATLYLAA 333 Rothia mucilag...
WP_023360745  360 SRITTgiva------------------plllGLLATAAAGRTL-----VACLALI 391 Actinoplanes friuliensis
WP_012692935  356 AMWAGafga------------------aavgFIDLDTVQLHAL-----VAVLTVG 387 Deinococcus deserti
Q9RUV8        363 ALLLGsvas------------------aalaFVDLDTLQLQGL-----VAALAVG 394 Deinococcus radiodurans
WP_014214916  317 LSMIFlpislnknshfrwnaienlfkllgliIIITSIFLPISFalyllAVGLSII 371 Pediococcus claussenii
WP_007747262  314 LFVMWliqkitshdqqaqgenkplffmfefaAMLAVAFLHKSWmilclDLIMLLV 368 Oenococcus kitaharae
WP_013370757  326 TGILCvlfi------------------lnifIVVPHLIVAAIMlffllfakmtv- 361 Paenibacillus polymyxa
10_pfamImport 325 GVFVIlfgs------------------tafvISVTPIWILAV------------- 348
Q8Y9X8        327 LLLLVglff------------------vnlyINLPLFVSFVSI-----WICAlvd 358 Listeria monocytogenes
Q8DTT2        310 ------------------------------------------------DLYRFDL 316 Streptococcus mutans
WP_012903116  334 LILSLlfas------------------naiaVLSIATIftlaiashfisfwvart 370 Rothia mucilaginosa
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