2A6R,3OEI,6N90,6L8E


Conserved Protein Domain Family
YoeB_toxin

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pfam06769: YoeB_toxin 
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YoeB-like toxin of bacterial type II toxin-antitoxin system
YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.
Statistics
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PSSM-Id: 284238
Aligned: 17 rows
Threshold Bit Score: 137.475
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2A6R_A        5 WSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVT----DDSLLIAAC 80  Escherichia coli
Q8DNR3        5 FTEDAWADYCYWQNQDKKTLKRINKLIKDIQRDPFTGIGKPEPLKYDYQGAWSRRIDAENRLIYMMD----GDSVAFLSF 80  Streptococcus pn...
Q9Z4V8        5 FTSHGWEDYVHWAESDRKVTKRINRLIADIARDPFKGVGKPEPLKGDLSGYWSRRIDDTHRLVYKPT----DDQLVIVQA 80  Streptomyces coe...
P9WF09        6 FDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAG----DDEVTMLKA 81  Mycobacterium tu...
Q82IF3        5 FEDQGWEDYTSWLKNDRKMLARINRLIEDVKRDPFTGIGKPEPLKYHLPGVWSRRIDDEHRLVYLVT----DKEVVILAA 80  Streptomyces ave...
Q8Z0C7        2 FQPEFLEDLEFWVETNQRVALKALDLVKETCRDPFKGKGKPEPLKYLDPDTWSRRLTQEHRIVYLVK----DDEINFLQA 77  Nostoc sp. PCC 7120
Q88AQ0        3 FTLSGWDDYTHWKDADQAISLSIDSLISQCLRTPFKGTGKPRPLTGDLTGYWSRRITKEHRLVYFYE----GGVLTVIAC 78  Pseudomonas syri...
Q88IR0        3 FTKEGWEDYCHWQNADLTILGNINRLIDVCLRTPFTGIGKPEPLKGDLSGLWSRRITREHRLVYFFE----AGMLTVLQC 78  Pseudomonas puti...
WP_010972002  5 WTLSSWDDYEFWQRTDARMVEKINDLIRNAKRTPFAGLGKPEPLKGDMAGYWSRRITAEHRFVYRVSgsgsEQRLEVIQC 84  Agrobacterium fa...
3OEI_C       17 FDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAG----DDEVTMLKA 92  Mycobacterium tu...
2A6R_A       81 RYHY 84  Escherichia coli
Q8DNR3       81 KDHY 84  Streptococcus pneumoniae R6
Q9Z4V8       81 RYHY 84  Streptomyces coelicolor A3(2)
P9WF09       82 RYHY 85  Mycobacterium tuberculosis H37Rv
Q82IF3       81 RYHY 84  Streptomyces avermitilis
Q8Z0C7       78 RYHY 81  Nostoc sp. PCC 7120
Q88AQ0       79 RHHY 82  Pseudomonas syringae pv. tomato
Q88IR0       79 RYHY 82  Pseudomonas putida KT2440
WP_010972002 85 RFHY 88  Agrobacterium fabrum
3OEI_C       93 RYHY 96  Mycobacterium tuberculosis
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