Conserved Protein Domain Family
AraC_N

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pfam06719: AraC_N (This model is not part of the current CDD release)
AraC-type transcriptional regulator N-terminus
This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.
Statistics
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PSSM-Id: 517385
Aligned: 204 rows
Threshold Bit Score: 70.9927
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_025424260            28 GVILVRADQEKP-PAHLLAKPALCVVAQGTKWTSFGD-Q-RHRYGAGQALLVNVEMPSVGRVVQASADCPFLGVIIELDP 104 Sodal...
Q3ID67                  29 elsIYDTYQNAQkVALHSKELLFCAMLSGKKVMHVEScQyHRAFLPHESFVLAPEQGVLIDFEQASLSAPTTCLAIEIST 108 Pseud...
PRJNA62513:MARPU_13645  14 eLSIYDTFAPARdVPLRADELLYCAMTQGRKRMHGPH-P-AHDFLPHQSYVLAPGEQVLIDFPEATLQRPTRCLTIAVER 91 
WP_012779690            34 eLNLFETLQPSAlVPLTFPDFVVTSMLRGKKVMHLFD-QpGFDYLPGETVLVPANVTMKIDFPEAQRDNPTQCIALAIDH 112 Dyado...
WP_014084763            35 eLNLFETYQTSElVPLKFNDLVVTSMLRGKKVMHLFE-EpSFDYLPGETVVIPSNVEMKIDFPEASLTNPTQCLALAIDQ 113 Flavo...
WP_014388160            34 elnIFETYQESElVPLKFNDLVVTSMLRGKKVMHLFE-DpSFDYLPGETVIVPQNTEMKIDFPEASKDNPTQCIALAIDN 112 Flavo...
WP_008199468            34 eLNIFETHQQADdVNLVFGDLVLTTMLKGKKVMHLFD-KpGFEYLPGESVIVPPNEVMKIDFPEAQWDNPTQCIALSISK 112 Algor...
CCH01127                36 ELNIYETQHVAEkVELTFNSPVLASMIRGKKVMHLPH-ApSFEFLPGESVIVPSQETMCIDFPEAQTENPTQCLALAIDV 114
WP_013994104            30 aLHVFETHRQAErVLLKFDQPVLASMVEGKKIMHLRD-YeSFDFLPGESLVLPSNETMCIDFPEAMRKKPTRCLALAISE 108 Zobel...
WP_015692250            29 ELHIFETHQMAEaVELQFRQPVLAAMLMGKKRMHLRD-KaPFCFLPGESVLLPPNELMRIDFPEANMHQPTKCLALALDE 107 Sapro...
WP_025424260           105 YRVKATLeslaapsgdtaaavngssvalatgsaattgtgavvTAIDSg-----------------------PLAQCILRL 161 Sodal...
Q3ID67                 109 DKITQVA-----------------------------------NALNIeqrfasddlfay-tpqlvhsqhnsQTQQLLARM 152 Pseud...
PRJNA62513:MARPU_13645  92 ERLRRLC-----------------------------------DRLDRhaplprgswqtv-hrhswhghhseATQGLLERI 135
WP_012779690           113 TKIQQIV-----------------------------------DRLSEtypregrqqfwslqhnqyhflnniELAQTLNKL 157 Dyado...
WP_014084763           114 NKISETL-----------------------------------SFLNErypkegsstwql-dyqnyffynniELASTINKL 157 Flavo...
WP_014388160           113 KIITDTL-----------------------------------DFLNEkypkvgkdnlwkldhenyffynnvELASTINKL 157 Flavo...
WP_008199468           113 EMIEATF-----------------------------------NLLNEkfpdkvitkdwgldlsyfhlintqDLSEIINRF 157 Algor...
CCH01127               115 DRVRQVT-----------------------------------NLLNErmplidsaagwqfgqtnffltndePIYQLIARL 159
WP_013994104           109 DKINKVL-----------------------------------QLMNEsmpkhdrsewgl-mdynfhfvndmGIFQILQRL 152 Zobel...
WP_015692250           108 DMVQQEL-----------------------------------DWLNRerpredgllwsf-qsgnfhfthslAVQQILQRL 151 Sapro...
WP_025424260           162 VQLL-ETP-QAIRLLAPMALSELYYWLLTGPHGAH 194 Sodalis praecaptivus
Q3ID67                 153 VHLFsEPD-EQRGYLIDLSLNELITRLLQQQSRDL 186 Pseudoalteromonas haloplanktis TAC125
PRJNA62513:MARPU_13645 136 AGSFlQAD-TDNDLVLDHGVDELLGRLLRQQGref 169
WP_012779690           158 IKICsGSA-LGKDILADLTLQELIVHIIQTQHlaa 191 Dyadobacter fermentans
WP_014084763           158 IKECmSNS-ITKDALADLTLQELLIRIIQTQTsks 191 Flavobacterium branchiophilum
WP_014388160           158 IKECmGSS-LTKDVIADLTLQELIIRIIQTQtvkr 191 Flavobacterium indicum
WP_008199468           158 VRIGvKDGsKEKDLIATLALKELLIRLSQTQARDm 192 Algoriphagus machipongonensis
CCH01127               160 IHVFtEDN-RAKDIIANLVLQELLVRLMQTQARtl 193
WP_013994104           153 LFLFtENH-PSKDFFVDNMLRELIIRILQTNErki 186 Zobellia galactanivorans
WP_015692250           152 IFLFtEGH-PSKDLFVGMALKELLLRVLQQENevk 185 Saprospira grandis
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