Conserved Protein Domain Family
VPS13_VAB

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pfam06650: VPS13_VAB (This model is not part of the current CDD release)
SHR-binding domain of vacuolar-sorting associated protein 13
SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44.
Statistics
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PSSM-Id: 488483
Aligned: 24 rows
Threshold Bit Score: 324.705
Created: 21-Aug-2024
Updated: 4-Feb-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6C2L6       1960 STQEVRES-------LVIDTQ-KAYLSVRLMDSP-----------------FDVLHSISAVSEGEFLHVLKP-RIAGvSH 2013 Yarrowia lipo...
O42926       1789 SKEVLTSR-------MSSKVQ-DVATKVRVSFDSt----------------WYPVDEVSVHQEGSFLYELKP-RIDQ-RT 1842 Schizosacchar...
3_pfamImport    1 DRKHTREN-------ISAVRH--NSLGIQLQDTP-----------------WDPLRDISVDRAGDHILTLRP-RLDRvSH 53  
Q6CQ11       1885 DWRVVRET-------LDTE---KCMLRASFADDD-----------------YSNIIDVDASKEGDVIHKLYP-PVAGvHN 1936 Kluyveromyces...
P87319       1848 EWRQMQDV-------VKQDQD-RSYIGFHFENSK-----------------WESLRHVRVNRVGEHIYPLISyDQDElKH 1902 Schizosacchar...
Q555C6       4767 nnnnnNNN-------NNNNNK-----------SN---------------------------------------------- 4782 Dictyostelium...
Q54LB8       2114 IPKVDSEM-------FQLTES-SEPVSLPMKISKsrdatmgehlnielfiqGSKISNLSMDAVGYRIY-----RIGStNE 2180 Dictyostelium...
2_pfamImport    1 ESEMINDPnnretfvFKKTSE-QVKARVLIPGQN-----------------LKYIEQIDLDKVRNRLRPCKD-QSGKkLF 61  
A0C9X9       2065 QQNLIFDDe------IERASSgQRRVNVTIKADKv----------------PFPIKLIDLDKISAKLFEQDN-------L 2115 Paramecium te...
Q9VU08       2548 QKSKLRHVhs---hqLNLHQIfvq------------------------ihgWTLIGPISVDKVGMFFRTTKLdSQFLtKS 2600 fruit fly
Q6C2L6       2014 RLVVEITLNS-DTIKEVLLKSAYTFTNHTQIEVDLGL-DDEGKVLPEV---FHIAPGES--RAVPIDR-LRTCSVLIRPA 2085 Yarrowia lipo...
O42926       1843 FLLVTVVLLE-SNIKQIILSSPYSIVNRTKEVIEVVCnDRSGHRQSSV---IKIDPNET--GYVPLDL-ACLYPLRIRPV 1915 Schizosacchar...
3_pfamImport   54 QIACEIKLV--NNIKVITFRSTLNVENKTSLPVEMIVvDSHGKAASAA---LKINPGES--CPLPLEA-AFEKRFRLRPL 125 
Q6CQ11       1937 RLLISSNLLE-NNVKLITFGSTLLLRNLTSTEVEYGL--SDAGKIKSI---GVINPNGT--RSIPIDS-AYQSSFHIRPL 2007 Kluyveromyces...
P87319       1903 YMVVDVNLGE-DYIKHITLRSPLLLINETQMEIDVVFcDSDGIQRSQI---YHMSPEES--CSLPIET-AYYYSIHIRPV 1975 Schizosacchar...
Q555C6       4783 -------------------------ENSQDQPPSIKTqe-----------fGPIRIDEN--FYIPIDFwNYNCSISIRPH 4824 Dictyostelium...
Q54LB8       2181 FITCEVRLRP-DGSKCCYIKSMDQFENNTSLNLELKC--------------------QE--NGSPFSI-AKHSKFSL-PI 2235 Dictyostelium...
2_pfamImport   62 EVITEVKLDMiSSKKVLNISSPYYFINDCNKQVSINLyDENKNFKQSI----TLKKGQR--IPIPIDF--LTGSFNVKFV 133 
A0C9X9       2116 QAFASVKLDQlTNQKILSLYAPVVIVNKTSKSIIISIsDDKHQQTMKLs-qQKIDQELShmAPIPLGF--VNPKIAIRf- 2191 Paramecium te...
Q9VU08       2601 RIVFDISLIG-SAQKLIKVKSSLGVINKLDRNVFLKM-TLKGTHSDGLssiSVIKPNDE--LSVPLKF--IDASLYVAHN 2674 fruit fly
Q6C2L6       2086 K---GYGYGWC------KPLEW---------TQFL----------------EKPP-VVACKRINAEDd-TLFFFQ----- 2124 Yarrowia lipo...
O42926       1916 S---KLGFLWSn-----QIVDW---------HSLN----------------KSPLqYLTCESTSTSWkhNLLVFA----- 1957 Schizosacchar...
3_pfamImport  126 R---GFGFDFSw----sAPLHW---------KTLL----------------AKPIrPISCKHQTPKE--PAFYFQ----- 166 
Q6CQ11       2008 Td--NASYKWSg-----IPIFW---------KMLS----------------ESPL-ALSCESDLET---AGFHFE----- 2046 Kluyveromyces...
P87319       1976 S---EFKFNWTs-----EAISW---------KDLV----------------DNKQsLVTCQHSDNTFstPACRFA----- 2017 Schizosacchar...
Q555C6       4825 Gk--DFKFDSIetlelcESSSWpdshiftstKDLInennaggsshyssngsNGSFsSISQQQQQKKT--ENFYLGtm--- 4897 Dictyostelium...
Q54LB8       2236 LvskDLCKFWIkl---eNSPYW---------SDPI---------------------DIYKLPDHENS--KLFKLQtvdkv 2280 Dictyostelium...
2_pfamImport  134 Qenl-----------nsDRLSF---------KKLC----------------------------------NNFLNKa---- 155 
A0C9X9       2192 ----------------sECQDYt--------EDIL-------------------VdSLIKQQDKNIE------------- 2215 Paramecium te...
Q9VU08       2675 Ts---------------ESDAYedtg--fsnEEILwka-----------cgKDDTrQLLAGYDTNKS--ILYTFVni--- 2721 fruit fly
Q6C2L6       2125 -----------ATAkydRNEPLTRVY-------PHMEIVLSPPVEIENLLPYDLQYRI----YDKSTKKDWT-------- 2174 Yarrowia lipo...
O42926       1958 -----------RNL---MDGSLQNDY-------PFLQLNILPTLQIENLLPYEINLRI----IERSSGNDWR-------- 2004 Schizosacchar...
3_pfamImport  167 -----------AQAnfdPKDPAARIY-------PRMALVLRAPVELENLLPYDLKFRV----HDKNSGLSSS-------- 216 
Q6CQ11       2047 -----------VEGsvdKDDPLSKIY-------PRMTVTLSAPLVLENSLPQDISFCL----KGRKEEARSE-------- 2096 Kluyveromyces...
P87319       2018 -----------ANAe-lKSQTISNHY-------PFMHITISALLEVKNLLPIDLNIRI----IDKDQEGVWM-------- 2066 Schizosacchar...
Q555C6       4898 ---------kqSGIrcdRTGLVST------------TLIVTPPIIFENVLLCDIEVRIm--sHSKRSKVNDTflknlvnn 4954 Dictyostelium...
Q54LB8       2281 gmfvslvhktiANRncdRFNNTFKFF-------P--------PIQIENILPYPFKLSIpgttIDKVN------------- 2332 Dictyostelium...
2_pfamImport  156 -----------EEMklgETFLMLKVHkdp-endQRTMFSIEPPYRIKNCLPKTLLIQF----INHKKFTAIT-------- 211 
A0C9X9       2216 -----------IETr-dGQYILVKVSkdn-dnqGKFELELQTPFRITNSLPLDIFIQM----MNHNKETTFT-------- 2270 Paramecium te...
Q9VU08       2722 ---------------------srEIYhckeqnlPGHKITLLPPLKINNMLCCDLMFKI----HEHAT------------- 2763 fruit fly
Q6C2L6       2175 ----NFIKRGGKSP-----------------------VHVVELNHLLLLSVHPRDCGFERTDFAVINAPKGDE------- 2220 Yarrowia lipo...
O42926       2005 ----SSLSPGDSLP-----------------------ILHTDSKSFLLMGINVPDLDLQPVDLPIIYTPISSG------- 2050 Schizosacchar...
3_pfamImport  217 ----SFLVKGGSSP-----------------------IHTVELSHMFLLNVTPEETSFKQSEYAIINTDDPE-------- 261 
Q6CQ11       2097 ----IFLQAGATIP-----------------------LHNVSLDSYLLLSIKPDDENFNWSNETLVNSPDVSA------- 2142 Kluyveromyces...
P87319       2067 ----SNVGIGECAY-----------------------VHSINISHVLLLQAESSESHYLPSSLATIITNDSAQ------- 2112 Schizosacchar...
Q555C6       4955 gkpaTTLSPGKQMPwysnhgndvgmtlslkglgkdqyFHLPSYIHNSPLATKGKDNNKDNSNNNNNNNNNNNDgievgsg 5034 Dictyostelium...
Q54LB8       2333 ------MGSGEKID-----------------------CHYYQPGSNLVAIVSELE-NFPETKHTLVSGDATSP------- 2375 Dictyostelium...
2_pfamImport  212 ----QVIPCGEVFE-----------------------FYNCSQRRDSFMKIQIP--GHFWSNEAKVSSGDIEKi------ 256 
A0C9X9       2271 ----KKICQQQTIE-----------------------DYQHGHYKCSYLRVYIE--GYYWSDEFKLQAAEELQ------- 2314 Paramecium te...
Q9VU08       2764 ----GRINSSESVN-----------------------IYNVNICQPLNLSITLD--NFQLSGQLKIPVSHRGVie----- 2809 fruit fly
Q6C2L6       2221 ---------------FDRENEF---VTRHE-DGQRLRLHLHYVSDNDSYAGI--RVQVFTPYLLLNKTGLNVQVRSHFHt 2279 Yarrowia lipo...
O42926       2051 ---------------QDVQTSA---LLTASdKQDVVKLILKYEKLPGTNYVS--KVMIYPPYVIFNHTDLSIQVTSSSP- 2109 Schizosacchar...
3_pfamImport  262 ---------------LPIEDNF---QLTDQ-QGLKTTLKLHYTTYPNSGGAF--KVQIYSPFIFMNKTGLPFDLAAKTWa 320 
Q6CQ11       2143 ---------------LEEEHRI---FITTL-DGQKLYLSLKYHA-NGKRAKT---ISIYAPYVIMNKTTHDLSVFSDRQw 2199 Kluyveromyces...
P87319       2113 ----------------ERDEYM---TITLQ-GGRKTRLGLSYTE---KYPGIy-HIEIFSPYIIINKSGSFLFVGPKNDy 2168 Schizosacchar...
Q555C6       5035 ligggidsnsfqhvsFTQEIQF---VCTPEyTNTNYTLILKIDHRFEGGCHI---ASIYCTNAIQNHTMIPFLLRPSNMk 5108 Dictyostelium...
Q54LB8       2376 --------------------TF---TKTFKlQQNNREISLDIERTELIKGVR--TLSFYCQYWLVNNSLLPIEVKls--- 2427 Dictyostelium...
2_pfamImport  257 -------------------------LIKDV-NGNQSEISCHHRGIEHQVVEGcrQFYIYCKGYLINESPYKLNVFTQDNk 310 
A0C9X9       2315 ---------------QKNDDCIsklSLNDS-NNNPTTLLIFESQKQQDYAKLtrEYVIHCSGYIINKSGIPLKYFTNNNk 2378 Paramecium te...
Q9VU08       2810 ------------------------pKLKLI-DIQKRELHVRVSIQSVPGKGM--ELYISAPVWIINKTGLPLIYKQEGTs 2862 fruit fly
Q6C2L6       2280 THSKVSSQLpafeeeeedyveehGEDVMqrghm---kraqPT--MFSLDQ--DDRKARVTIKVGD--------------- 2337 Yarrowia lipo...
O42926       2110 NSIRYTIPSgs-----------ySNDIK------------PY--FYSFDE--SGRKNRAMISIDNg-------------- 2148 Schizosacchar...
3_pfamImport  321 GGQRPIAGRdqf--------endWQNETp----------tPF--LFSFPN--EDRRSRLHIRVNN--------------- 363 
Q6CQ11       2200 GVVKSDVFmk------------dGQKLAr-----------PK--MFSFQYe-DYNRNRAKIKFTE--------------- 2238 Kluyveromyces...
P87319       2169 NRISFSSASlss--------gedGKVV-------------PC--MFSYSH--NYGSRRCRLRADN--------------- 2208 Schizosacchar...
Q555C6       5109 LVNALTLETng----------------------------dPL--MISHDKfyCYHPSAPKIPSKE--------------- 5143 Dictyostelium...
Q54LB8       2428 ----------------------dNQVLLvppnlpdqlprpPV--LYSNNT------IRARIPLQAeqp----------mn 2467 Dictyostelium...
2_pfamImport  311 k--------------------keERKLVggqr-----qiyP-----------DEALNTNIILLGQntgdlms--lsdakf 352 
A0C9X9       2379 NDLT------------------------------------PLggMESINT--GDPLNRQIVLLGTesgnilslshtstnq 2420 Paramecium te...
Q9VU08       2863 HTAAGQFEEhe-----------tARQVA------------PL--MFSFSD--QEGSPALVLRLGKayg----------sn 2905 fruit fly
Q6C2L6       2338 SKWSDSQSFDAI---GGTTEIIMANSSKQ---SEIH--VGMHVFEGKGRYK---LTRFIELTPRFIIHNCLKEELRIRDP 2406 Yarrowia lipo...
O42926       2149 TSWSADIGFDTL---GSSSQVEVRKTNES---DVCL--LGMSISESSGKFC---LTKSVTFTPRFVFKNHLDCTVSLREF 2217 Schizosacchar...
3_pfamImport  364 SKWSQPVSFEPV---SADMQIVVPSASGD---NDNY--VGLSYAEGIGKYK---LTKVITIAPRFLVKNIYSRPIKIRQY 432 
Q6CQ11       2239 TNPSVPVSFDAI---GQSVDISLELLNHN---QECN--LGINVKEGEGKYR---FTKIVEISPRYIFRNSTSEVIEIMEY 2307 Kluyveromyces...
P87319       2209 SNWSEPVSFDAI---GSVFEVELPSKEDH---NKVYr-LGIFVETGPDGYS---KTNIVTITSRFIVRNKTRWSLVIAEP 2278 Schizosacchar...
Q555C6       5144 --------FDIIlgkEDIIEIQFDASKDQ---MRFQ--FKAIVSTGFNIFF---RTRIVDIYPRFVLVNKLPISLSYTQV 5207 Dictyostelium...
Q54LB8       2468 KSFCEKFPISAV---GNPNTIFLTNPTRT---YELS--YKVDFCPNE-RFR---LSKTVTFVPKNVICNDLPFPILVAQC 2535 Dictyostelium...
2_pfamImport  353 DQVSKQASIGGV---GNT-QIDIQTINEQg-dTVFQt-MGINVSLKNVDYEqklFSKVITISPRFIIVNKTGYALELKQN 426 
A0C9X9       2421 KISQFPIQISTI---GEP-EIDVIISNEEdtnQLLQtfLGAKLELGRCNKKytlFNKIITLEPRFIIINNCNQDIVIASD 2496 Paramecium te...
Q9VU08       2906 NMWCKSFSt-----hKDLADRDLRAENTKgs-----yaIGISVRRGRGLYA---CTTFVTLSPRFHLHNRSGYKLEFMQL 2972 fruit fly
Q6C2L6       2407 m------------------------------------cNIEMSVGAFKPIHFMSETplGDKVCLeA-SFTGEGC-----Q 2444 Yarrowia lipo...
O42926       2218 gs----------------------------------skVLHLPSNELIPMMYFSNP--QEIALL-L-SLPSSNN-----H 2254 Schizosacchar...
3_pfamImport  433 gt----------------------------------rhEYSVGVGERIAIHQLQRG--APPQLA-M-AFDEPNV-----T 469 
Q6CQ11       2308 gt----------------------------------ssPTILAPKELTPLYFLKRT--LSKKFV-A-RFAKIPS-----T 2344 Kluyveromyces...
P87319       2279 yn----------------------------------dfIAEIAPEGEEFLTYLRKH--SHPML----KLSSSDCy----L 2314 Schizosacchar...
Q555C6       5208 nkdla----------------------------imakdSQLLGPESSIPFHWFNGK--EEQQLS-I-SIGQGTSds-swK 5254 Dictyostelium...
Q54LB8       2536 vstidgidkmalnfsgsglssssgsngkgvsnpvrllgELRLDPGEYKPFHWEENV--ENKKIS-IrPITNEKNpq-ewR 2611 Dictyostelium...
2_pfamImport  427 sv----------------------------------nkIIAINKDSRIPLYWFDDN--KDRFLN-I-RLVEEEKd---wK 465 
A0C9X9       2497 ed----------------------------------lfSQSVPSNQRIIFQSHYNS--KTKIRNpC-QFISMNLsnndyQ 2539 Paramecium te...
Q9VU08       2973 cdivnyd-------------------------rpdprkIISAPVDCNFAFHWPNWD--QEQIIC-V-RIPEIECc----C 3019 fruit fly
Q6C2L6       2445 WSAPFSISDIGKTYVKIYRA-----GKGFTLLNVDVILEQATIFLHF-EEAGQNWPFSIRN-FTEEDFTF--FQ--ANPF 2513 Yarrowia lipo...
O42926       2255 WTSPFLAQNVGIVHLKAFEFddddnNMSTTLLRLCVTLEDATFFVTI-TKEDKAWPFRLKN-CTSREICY--EQkrPDPE 2330 Schizosacchar...
3_pfamImport  470 WSAPFNIADLGRTNITVRRQsg--sNSKTYLMRVETHLEGSSIFLYVsKEKDDAWPLRLRN-DTNLSLAF--QQidHDPA 544 
Q6CQ11       2345 WSNPFRLKDVGESFVKMNIT-----DAAQRLIKMDISLEGATVFINA-VDSDDNWPFSIRN-FSDHEFLF--WQ--RNPR 2413 Kluyveromyces...
P87319       2315 WSSSFYIEEIGSTHVRLMT------SEGEKLLRLEIVIKNATIFISI-FEETGDWPYYIKN-ESGVLLKF--WQ--VNPI 2382 Schizosacchar...
Q555C6       5255 WSGGMRIDQIGVNYIKLQHQh---dDLIEQSIKVEVRDTSESTMVYFySNDPQNLPFHIKN-ETKTIISY--QQ--KHPN 5326 Dictyostelium...
Q54LB8       2612 WSGGFFVDSISDYVVKSRNTer--pDHDSLLFHVNIKEKQGTHFIRIpLSSKESPPYIIQN-DTQFKISF--FQr-DSPE 2685 Dictyostelium...
2_pfamImport  466 WSGNMNVLELGTVNFMIRNQe---nKMDVSFLRTDVRSDDSNIYIVVeKVTEKERPYVIQNySKNFKIELkdLNiiLPPN 542 
A0C9X9       2540 SSSRLNISAIGILYYQLRRKd---qPKERLYFSCDIRQEGCSLYIIFnQLPQDQAPYKIELpVENLELEIpeLDviLNSN 2616 Paramecium te...
Q9VU08       3020 WSKGIPIKDVQSLYINVRNE-----WGEMFFLRLEIISKDATFILLFtDARTLPPPIRIDN-CSEVVINF--SQlrSKPV 3091 fruit fly
Q6C2L6       2514 VNDDGEelds--------hpkfKPLTYKLPGKSVMPYAWDYPASPV 2551 Yarrowia lipolytica
O42926       2331 SVDSRFlq------------gsRSMKYALNPGEEANYSWDFPILKS 2364 Schizosaccharomyces pombe 972h-
3_pfamImport  545 LTDRERa---------------RPVHF-LPPRSVQNYAWDWPTA-- 572 
Q6CQ11       2414 FVDDESdeldyyyqedeeevdfEPIYYRIPPRSIMPYSWDYPSAKQ 2459 Kluyveromyces lactis
P87319       2383 DASEGKnnta------------llkYHDIPPHSEVKYSWDYPCCAN 2416 Schizosaccharomyces pombe 972h-
Q555C6       5327 SKK-----------------------YTLKPNEDRYFTWDFPSGER 5349 Dictyostelium discoideum
Q54LB8       2686 NID----------------------Y--IEPKEKLCYGWDEPSAEY 2707 Dictyostelium discoideum
2_pfamImport  543 EKEDKT----------------------VDEHHQYYFSWENPFEK- 565 
A0C9X9       2617 -------------------------------NQVTYFAWDDPQRLQ 2631 Paramecium tetraurelia
Q9VU08       3092 WITP------------------------VRPQSSLSYVMDDPLGQQ 3113 fruit fly
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