Conserved Protein Domain Family
SHR-BD

?
pfam06650: SHR-BD 
SHR-binding domain of vacuolar-sorting associated protein 13
SHR-BD is a family of eukaryotic proteins found on vacuolar-sorting associated proteins towards the C-terminus. In plants, the domain is found to be the region which interacts with SHR or the SHORT-ROOT transcription factor, a regulator of root-growth and asymmetric cell division that separates ground tissue into endodermis and cortex. The plant protein containing the SHR-BD is named SHRUBBY or SHBY, UniProtKB:Q9FT44.
Statistics
?
PSSM-Id: 399561
View PSSM: pfam06650
Aligned: 26 rows
Threshold Bit Score: 217.158
Threshold Setting Gi: 124465082
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q54LB8       2404 RTLSFYCQYWLVNNSLLPIEVKLSDNqVLLVPPnLPD---Q---LPRPPVLYSNNTiRariPLQAEQPMNKS-------- 2469 Dictyostelium...
O42926       2084 SKVMIYPPYVIFNHTDLSIQVTSSSP-NSIRYT-IPSg--Sy-sNDIKPYFYSFDE-S---GRKNRAMISIDng------ 2148 Schizosacchar...
P87319       2142 YHIEIFSPYIIINKSGSFLFVGPKNDyNRISFS-SASlssGe-dGKVVPCMFSYSH-N---YGSRRCRLRADns------ 2209 Schizosacchar...
Q9VU08       2836 MELYISAPVWIINKTGLPLIYKQEGTsHTAAGQ-FEe---HetaRQVAPLMFSFSD-Q---EGSPALVLRLGkayg---s 2904 fruit fly
Q171S2       2807 IQISISAPYWLINKTGIPLVFRQDDLdCESAGQ-FSEn--Eq-aRMISPFMFAFSD-P---SCSGCLTMRLGkrfg---q 2875 yellow fever ...
Q7Q1I0       2826 VQISIGAPYWLVNRTGLPLVFRQDDLdTECAGQ-FSEn--Ee-aRMITPFMFAFSD-P---GCSGSVTMRLGrrfg---g 2894 Anopheles gam...
XP_021016270 3252 LKIFISAPYWLINKTGLPLIFRQDNAkTDAAGQ-FEEh--El-aRSLSPLLFCYAD-K---EQPNLCTMRIGrgihp-eg 3322 Ryukyu mouse
XP_001633513 3560 LRISIFAPYWMVNNTGIPLIFRQEGSsHEMAGQ-FEEh--Em-aRSLTPLLFSFID-R---DTPGRCQMRIGnsyhagtg 3631 starlet sea a...
Q555C6       5082 HIASIYCTNAIQNHTMIPFLLRPSNMkLVNALT-LE--------TNGDPLMISHDKfY---CYHPSApk----------- 5138 Dictyostelium...
A0C9X9       2352 REYVIHCSGYIINKSGIPLKYFT--NnNKNDLT-PLg------gMESINTGDPLNRqIvllGTESGNILSLSht------ 2416 Paramecium te...
Q54LB8       2470 ---FCE-----KFPISAVGNPNTIFLTNPTRtYe---------------------------------------------- 2495 Dictyostelium...
O42926       2149 -tsWSA-----DIGFDTLGSSSQVEVRKTNE-Sdv--------------------------------------------c 2177 Schizosacchar...
P87319       2210 --nWSE-----PVSFDAIGSVFEVELPSKED-Hnkv-------------------------------------------y 2238 Schizosacchar...
Q9VU08       2905 nnmWCK-----SFSTHKDLADRDLRAENTKGsYa---------------------------------------------- 2933 fruit fly
Q171S2       2876 stiYCQ-----PFKLDQGIKHRQLI----GGsEsf--------------------------------------------- 2901 yellow fever ...
Q7Q1I0       2895 spnWCQ-----PFKLEQGTQHRQLR----GPsEtf--------------------------------------------- 2920 Anopheles gam...
XP_021016270 3323 mpgWCQ-----GFSLDGGSGVRALKVIQQGNrPgli-------------------------------------------y 3354 Ryukyu mouse
XP_001633513 3632 kpiWCS-----PFSLDTPREFNRVHARQADGrPdksnlidypeddededtakaprrnpfdfgdtntpaldfsfgadskvy 3706 starlet sea a...
Q555C6       5139 --iPSK-----EFDI-ILGKEDIIEIQFDAS-Kdqm------------------------------------------rf 5167 Dictyostelium...
A0C9X9       2417 --sTNQkisqfPIQISTIGEPEIDVIISNEEdTnqll-----------------------------------------qt 2453 Paramecium te...
Q54LB8       2496 -LSYKVDFCPNERFRl--SKTVTFVPKNVICNDLPFPILVAQCVStid---gidKmalnfsgSGlssssgsngkgvsnpv 2569 Dictyostelium...
O42926       2178 lLGMSISESSGKFCL---TKSVTFTPRFVFKNHLDCTVSLREFGS---------S-------KV---------------- 2222 Schizosacchar...
P87319       2239 rLGIFVETGPDGYSK---TNIVTITSRFIVRNKTRWSLVIAEPYN---------D-------FI---------------- 2283 Schizosacchar...
Q9VU08       2934 -IGISVRRGRGLYAC---TTFVTLSPRFHLHNRSGYKLEFMQLCDivnydrpdpR-------KI---------------- 2986 fruit fly
Q171S2       2902 iIGIEVQRARGRYNQ---TSIVTFSPQYQLYNRSSYKLQVLQKCFt--------S-------TVhdaia----------- 2952 yellow fever ...
Q7Q1I0       2921 iIGIEVRRARGKYGQ---TSIVTFSPRYQLYNRSSYTLQVLQKCLvd------tT-------TVydptmvarssstssss 2984 Anopheles gam...
XP_021016270 3355 nIGIDVKKGRGRYID---TCMVIFAPRYLLDNKSSHKLAFAQREFar------gQ-------GTanp------------- 3405 Ryukyu mouse
XP_001633513 3707 dIGIDVRFGRGRFCL---TRIVTFATRYQLENKTPHTLAFSQRHFvr------dQ-------GEeeemrg--------wl 3762 starlet sea a...
Q555C6       5168 qFKAIVSTGFNIFFR---TRIVDIYPRFVLVNKLPISLSYTQVNKdla---imaK-------DS---------------- 5218 Dictyostelium...
A0C9X9       2454 fLGAKLELGRCNKKYtlfNKIITLEPRFIIINNCNQDIVIASDE----------D-------LF---------------- 2500 Paramecium te...
Q54LB8       2570 rllgElRLDPGEYKPFHWEENVENKKIS----IRPITNe--kNPQew-rWSGGFFVDSI-SDYVVKSRNteRpdhDSL-- 2639 Dictyostelium...
O42926       2223 ----L-HLPSNELIPMMYFSNPQEIALL----LSLPSS----NNH----WTSPFLAQNV-GIVHLKAFEfdDddnNMStt 2284 Schizosacchar...
P87319       2284 ----A-EIAPEGEEFLTYLRKHSHPMLK----L---------SSSdcylWSSSFYIEEI-GSTHVRLMT------SEGek 2338 Schizosacchar...
Q9VU08       2987 ----I-SAPVDCNFAFHWPNWDQEQIIC----VRIPEIe---CCC----WSKGIPIKDV-QSLYINVRN--E---WGEmf 3044 fruit fly
Q171S2       2953 ksnsI-EAVPGCHIAYHWPRLDKVQELC----VRLPEIp---ECL----WSAGIPICET-QSLYINIRT--V---NGAmh 3014 yellow fever ...
Q7Q1I0       2985 saacI-EAVPGCHIPFHWPRLEREHELC----VRLPEVp---ECL----WSGGIPITSTgLSLYINIRN--M---NGAmh 3047 Anopheles gam...
XP_021016270 3406 -ngyI-STLPGSSVVFHWPRNDYDQLLC----VRLMDVp---NCI----WSGGFEVNKN-NSFHINMRD--T---LGKcf 3466 Ryukyu mouse
XP_001633513 3763 lveqK-GALGTATVTRSLDTDPQASELV----IQVR-------------LAGGIGVSVV--------NY--V---PEElv 3811 starlet sea a...
Q555C6       5219 ----Q-LLGPESSIPFHWFNGKEEQQLS----ISIGQGtsdsSWK----WSGGMRIDQI-GVNYIKLQH--Qh-dDLIeq 5281 Dictyostelium...
A0C9X9       2501 ----SqSVPSNQRIIFQSHYNSKTKIRNpcqfISMNLSn--nDYQ----SSSRLNISAI-GILYYQLRRkdQ---PKErl 2566 Paramecium te...
Q54LB8       2640 LFHVNIKEKQGTHFIRIPLSSKEsPPYIIQND----TQFkISFFQR-------------DSPENIDYIEPKEKLCYGWDE 2702 Dictyostelium...
O42926       2285 LLRLCVTLEDATFFVTITKEDKA-WPFRLKNCt---SRE-ICYEQKrpdpesvdsrflqGSRSMKYALNPGEEANYSWDF 2359 Schizosacchar...
P87319       2339 LLRLEIVIKNATIFISIFEETGD-WPYYIKNEs---GVL-LKFWQVnpidas--egknnTALLKYHDIPPHSEVKYSWDY 2411 Schizosacchar...
Q9VU08       3045 FLRLEIISKDATFILLFTDARTLpPPIRIDNCs---EVV-INFSQLrs---------kpV---WITPVRPQSSLSYVMDD 3108 fruit fly
Q171S2       3015 FLRLETIVQGATTFMIFSDAQSLpPPIRLDNYs---EVP-IVFHQRaspr------ienH---LKSYVRPHSSIAYVLDD 3081 yellow fever ...
Q7Q1I0       3048 FLRLETILHGATYFMIFSDAQALpPPIRLDNYs---HVP-ITFaqad---------mkaT---FKTVVRPQCSIAYVLDE 3111 Anopheles gam...
XP_021016270 3467 FLRVEITLRGATYRISFSDTDQLpPPFRIDNFs---KVP-VVFTQHgva-----------eprLRTEVKPMMSLDYAWDE 3531 Ryukyu mouse
XP_001633513 3812 YGALEQIEVDYVRTPKIETLEANiGRIQVDNQlfnsTLP-VLLYPTaaek------gsrE---EHATQQPTLHIS-ASKE 3880 starlet sea a...
Q555C6       5282 SIKVEVRDTSESTMVYFYSNDPQnLPFHIKNEt---KTI-ISYQQK-------------HPNSKKYTLKPNEDRYFTWDF 5344 Dictyostelium...
A0C9X9       2567 YFSCDIRQEGCSLYIIFNQLPQDqAPYKIELPv---ENLeLEIPELdvi-------lnsN----------NQVTYFAWDD 2626 Paramecium te...
Q54LB8       2703 PSAEY 2707 Dictyostelium discoideum
O42926       2360 PILKS 2364 Schizosaccharomyces pombe 972h-
P87319       2412 PCCAN 2416 Schizosaccharomyces pombe 972h-
Q9VU08       3109 PLGQQ 3113 fruit fly
Q171S2       3082 PLGYQ 3086 yellow fever mosquito
Q7Q1I0       3112 PTGAP 3116 Anopheles gambiae str. PEST
XP_021016270 3532 PTLPp 3536 Ryukyu mouse
XP_001633513 3881 PTRIQ 3885 starlet sea anemone
Q555C6       5345 PSGER 5349 Dictyostelium discoideum
A0C9X9       2627 PQRLQ 2631 Paramecium tetraurelia
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap