6Z3M


Conserved Protein Domain Family
RGM_N

?
pfam06535: RGM_N (This model is not part of the current CDD release)
Repulsive guidance molecule (RGM) N-terminus
This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but a protein from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.
Statistics
?
PSSM-Id: 517323
Aligned: 22 rows
Threshold Bit Score: 162.18
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6Z3M_C         5 CRIQ-KCTTDFVSLTSHLNsAV--DGFDSEF--CKALRAYAGCTQRTSKACRGN--LVYHSAVLGISDLMSQRNCSKDG- 76  human
XP_008117653  51 CRIM-KCNSEFLAATSSGP-HHlgIEEASEF--CTALRAYAHCTHHTARTCRGD--LFYHSAVHGIDDLMAQHNCSKEG- 123
XP_018866846  48 CKIL-KCNSEFWSATSGSH-APa-SDDTPEF--CAALRSYALCTRRTARTCRGD--LAYHSAVHGIEDLMSQHNCSKDG- 119
XP_014342396  32 CKIL-KCNSDFWATTTGTN--PtgAEEAPRF--CIALRAYAHCIKRTARTCRGD--LAYHSAVHGIEDLMTQNNCSKVG- 103
XP_069042142  37 CRIQ-RCNSEYVSATSPAGgLQeeAPADPDY--CAALRAYSLCTRRTARGCRGD--LVYHSAVFRIKELFAQHNCSSAG- 110
EDO31635      45 CQVQpKCTDPYVQ-----------READTAFklCASLKLYKLCLDRIRKQCRGSggIYYNTVRTLVPVLMRNHKCDNVTl 113
4_pfamImport   1 SRLE-GCRREYTAGLEEAG-IQq-PEPSPAY--CQELRLFGQCVQRTTKGCRGD--LAYHSTSSLVDALAKRYNCSQHKl 73 
EFX90410      12 CKVD-SCTRQFQQAAMASG-V---RRGSAAF--CVILRQYSDCLRSTARSCRGH--LAYHSTITLVQNWNGDSNCSYVGg 82 
EFO84620      21 CRVE-ECAAWFQKTKDYEN-LV--PKATERY--CQVLQTYLKCMNDTQRFCHGN--LRFHSSELVMRRHWKEFECEKWEs 92 
XP_002428231   8 CKAD-FCSSQYTESLDREK-IDr-PEPTEAS--CKILRNFGKCLRMTAKECHGN--IPYHSSIVMVKQLSKENNCEALIg 80 
6Z3M_C        77 -----------------------------PTSSTNPE------------VTHDPCNYhshagarEHRRG-D-QNPPSYLF 113 human
XP_008117653 124 -----------------------------PTSPPRVRppprad-sqersDSPEICHY-------ERSFH-KhSPPPNYTH 165
XP_018866846 120 -----------------------------PTSQPRLRtlppagdsqersDSPEICHY-------EKSFH-KhSATPNYTH 162
XP_014342396 104 -----------------------------PIAPPQPCtqppwd-sqersDSPEICNY-------ERSFH-KhSAAPNYTH 145
XP_069042142 111 -----------------------------PTSPARAPgtp-------hpAAPQLCDY-------ESRALaA-GPPKKYAH 146
EDO31635     114 pekekgllnif------kkrqmqgnippkPTVKPK-------------------CTR-------TKRLY---SKSEEKKY 158
4_pfamImport  74 rgerr-------------------qgvarP--------------------AHLACTY-------HR------AQTVVKQE 101
EFX90410      83 asgaggapaifnkdrprnhdhhspkvddsP-----------------------SCTY-------QGR--------PEVTH 124
EFO84620      93 cnekn-------------------edkrrP---------------------VNTCYF-------NPP-----PSSRKIKY 120
XP_002428231  81 pekt---------------------lpspPLLRPSIIpklpvntvpvsvVTQRSCTF-------LGK--------NKFRY 124
6Z3M_C       114 CGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNK------ITIIFK 172 human
XP_008117653 166 CGLFGDPHLRTFLDSFQTCKVPGAWPLIDNSYLNVQVTNTPVRPGSMATATSK------LTIIFK 224
XP_018866846 163 CGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSAATATSK------LTIIFK 221
XP_014342396 146 CGLFGDPHLRTFTENFQTCKVRGSWPLIDNNYLYVQVTNTPVLPGAAATATSK------LTIIFK 204
XP_069042142 147 CGLFGDPHLRTFRDEFQTCKVEGAWPLIDNRYLSVQVTNVPVVQGSSATATSK------ITVIFK 205
EDO31635     159 CGLFGDPHLRTFGDAKQTCVVEGAWPLVENHFLIVQVTNVPLVDGSSATATNK------ITVIIQ 217
4_pfamImport 102 CGLYGAPDLRTFSSHYQKCNVVGTWPLLDNDYLAVQITNSRI-DQSLGIATTKalfykqITVIIK 165
EFX90410     125 CSFYGDPHLVTFNGDFQTCKVAGAWPLIDNAYLAVSVTNEAVVPGSSATATTK------ITIIIK 183
EFO84620     121 CSLFGDPHLIMFNGTIQTCSEEGARPLVDNRYFLVQVTNKNVRGEALTTTVTK------VTVLIR 179
XP_002428231 125 CGLFGDPHLKTFHSKYQTCKLKGAWPLIDNPYLAVSVTNEPVIENSPATVTTK------VTVIIK 183
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap