4BQ6


Conserved Protein Domain Family
RGM_C

?
pfam06534: RGM_C (This model is not part of the current CDD release)
Repulsive guidance molecule (RGM) C-terminus
This family represents the C-terminal region of repulsive guidance molecule (RGM), although in some sequences it represents the full protein. RGM is a GPI-linked axon guidance molecule of the retinotectal system, and controls cell motility, adhesion, immune cell regulation and systemic iron metabolism. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum. This domain is responsible for neogenin (NEO1) binding.
Statistics
?
PSSM-Id: 517322
Aligned: 29 rows
Threshold Bit Score: 193.249
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4BQ6_D        58 CTDQKVYQAVTDD--LPAAFVDGTTSGGDSD-AKS------------LRIVERESGHYVEMHARYIGTTVFVRQVGRYLT 122 human
EDO31635     223 CVQQKIYKAKSGA--LPAAFDDGTSTTGTSEcS--------------VRILEVEKNSLIHIRLCHIGTDIYVRQVSQYLT 286
KAF8367639   298 CTVSKRYEAASETehLPTAFVDGT-THSTVDgKRA------------VEVLRQSSD-HVEIVLHHASTRLHIRRAGPYLS 363
2_pfamImport   1 CTSTLRYEANADEqgLPQGFTDGTTFQRTDHnRNS------------VEVLSQDNS-YVEIAMHYIHSSIHIRRQGPYLS 67 
XP_045097495 184 CSSSLHYEATSDEegLPRGFVDGTTYQAKGSsSNS------------VEVLWQDNN-YVEIALHFIHSSIHIRRQGPYLS 250
EFX90410     188 CAPERTYEAAVDS--VPASFVDGSQWGGPLPpGSSglpssafehlvpVRIVEKEPGRHVEIHARHLGATLIVRQVGRYLT 265
8_pfamImport   1 CIDQQLYQAELDN--VPAAFADGSMWSGEWRgHRS------------LTVRTLNPGRHAEIRAVHVGTVLVVRQSGRSLG 66 
XP_008119674 210 CVDEKIYQAEAGD--LPAAFIDGSVNGGERPgGSS------------LTLHERTSGRHVEIHAAYIGTTIAVRQAARHLS 275
XP_003229604 210 CIDQKVYKAEVDN--LPAAFEDGSVNGGERPgGTS------------LSIREHIPGRHVEIHAAYIGTTIAVRQAGRQLS 275
XP_026694295 234 CTEQKFYLANNSK--LSPSFTDGTISSGS------------------VSVDEVIPGRHVEIQVRFIGTTIIIRKVGSFLT 293 vase tunicate
4BQ6_D       123 LAIRMPEDLAMSYEE--SQ---------DLQLCVNGCPLSERIDDGqgqvsAILGHSL-----------------PRTSL 174 human
EDO31635     287 FHIRMPHA--LTLEDf------------SMGLCVNGCPKQQIIDYR-----ELLSFTE-----------------RRLAK 330
KAF8367639   364 VAVTIPNHVLAQEQL--PYssndralplSEQLCHAGCPLHSLVPLP-----AALANPQ-----------------AFSEC 419
2_pfamImport  68 VSVKAPSS---VLETdsDV---------SNEMCWSGCSRFSVIAQE-----SVFRKPE-----------------KFVAC 113
XP_045097495 251 VSVKAPSI---VLETegDV---------ANEMCWAGCRRRSRIAAE-----TAVEEPK-----------------KFAEC 296
EFX90410     266 FAAKLPRE--IALQGagRE---------GLQLCVKGCPASERIDVG-----TVLLGSGhgrhpsmpssgrfyrsqTSESP 329
8_pfamImport  67 LSVLSPRGVVEAFRP--EQ---------DLQLCVWGCPPSQRLN-------------------------------TLHPP 104
XP_008119674 276 FSIQAAEQVAFSFTD--EQ---------DLQLCVFGCPSDQRVS--------------------------------RSAC 312
XP_003229604 276 FSIRAAEEVARSFTE--EQ---------DLQLCVGGCPLSQRIS-------------------------------RDECC 313
XP_026694295 294 FAIRMPHEFIEGLDP-------------SRQLCVQGCPSRHRIDLK-----ASNKGHGntllpgtk-gsrrnaaiPPVPK 354 vase tunicate
4BQ6_D       175 VQAWPGYTLETANTQCHEK-----MPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHP 232 human
EDO31635     331 VLPRKKITRREAKKKCQDS------NVTGFYLDSCMFDLLTTGDSNFTLAAKSALDDAFVMDP 387
KAF8367639   420 HGTPVALPLKLATERCKSF------NVTDDFFDACVFDLIATGDELLGKMSREAQRDLETQLT 476
2_pfamImport 114 YARQLHVPKKVAEERCSSV------GTTDAFFAACVFDLMLTGDDYLVHLARNVQSDFRRLAP 170
XP_045097495 297 YRRRVHVPKKVAEDRCRNV------GTSGTFFDACIFDLMFTGDDYLVHLSRNAQSDFRRLAP 353
EFX90410     330 SALVKGMTRDAALALCREY------NLTDYYLDSCMFDLMTTGDPSFSLAASRAQADYFSLLP 386
8_pfamImport 105 PSDPLMSTALSAEDHCAGL-----LPARDVYYQACVFDLIASGDLNSSMAAVSALQDAQTMIP 162
XP_008119674 313 CPQRGNVTPEVARRLCKEK-----LEVDDVYFQSCVFDVMVSGDANMTQAAQGALEDAKAFHP 370
XP_003229604 314 CNVHTTIPAEKAHQLCKEK-----LPVEDLYFQSCVFDVVTSGDANFTLAAHGALEDARVFHP 371
XP_026694295 355 AEQKKIFTEEEARQKCQQImlaetSPIDEvgnkdgqtdsdevnqlshaqssaafsslvpsedq 417 vase tunicate
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap