5FRU


Conserved Protein Domain Family
XylR_N

?
pfam06505: XylR_N 
Activator of aromatic catabolism
This domain is found at the N-terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Statistics
?
PSSM-Id: 399485
View PSSM: pfam06505
Aligned: 64 rows
Threshold Bit Score: 84.4871
Threshold Setting Gi: 503022314
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5FRU_A          19 LarrLRFAMKEGSIWLGEQRMILLHTAALGALRKELVDTLGMERARGLFMRMGFHSGVRDA-ELAKTMRSGH-SDFGMLE 96 
WP_014399192     9 LkelLAFEPKGGVIRFAGQRALLMDPVTLGLLRKELIGMLGMTAARGIFTRLGYAHGWRTA-EAMKTAVPWK-DEAEWRR 86  Corallococcus...
jgi:Glov_0917    8 LremLSFNPEGGIIHLLGERVLIHNANVSGLLKKELIDSLGVFTARCILTRLGFANGWQTA-KNLEQHAPDVwKESRKY- 85  Geobacter lov...
jgi:Glov_0888   16 LrriLSFRPKGGTIQFMGHRAMIVDALAMGLLRKELIENLGNFAARTILTRFGYAHGWSTA-DNLCIEYP---DLKDDPK 91  Geobacter lov...
Q088E6           8 LrelLAFKPRGGTMSFLGQRTYLTDMVSHGILRKELLSTVDSNVTRTIITRSGFIRGWLLA-EQIKRKMPEVwSEARQGK 86  Shewanella fr...
WP_012469017     8 FrelLSFNPQGGVIRFLGQRAYLVDATAQGLQRKEFIDAFGPEMVRTIVTRSAYAHGWRVA-ETVKTELPEVwAEAKEGK 86  Geobacter lov...
WP_012238940     8 IrklLDVDARGGVVRFAGERAVILDAGALGTLREELVRLAGYAGARAVLTRFGVEHGARMA-EAMVSRLPWD-SEAELHG 85  Sorangium cel...
jgi:Desgi_0640   9 ftdlLTVNKDEGLIRFNQNRLLLMESETIFQLREELIQNLGYDIARNVLTRFGYRSGMKDV-VAFKNLYYFE-SDADWLL 86  Desulfallas g...
jgi:Desgi_2408   7 LtelLDINKEDGIINFRGHRMLVFLSSYFYELRKEMIDSLGEDIVRGILARFGYRCGFNDA-TSFQNFPEFE-NDANWML 84  Desulfallas g...
Q15NZ0          37 LsdrLRFIPEEGRVVLGDNRLLIANLAFFSVMRQEHLNSFGVEKSRGILTRMGYSAGYQDAeEVATHFRSQG-NAYEVLT 115 Pseudoalterom...
5FRU_A          97 MGPCLHTIEGVVRVTPLTVDIN 118
WP_014399192    87 SGGRLHTLMGQVRVERIErtaq 108 Corallococcus coralloides
jgi:Glov_0917   86 AGAKLHSLTGFNNVTLNtrtdg 107 Geobacter lovleyi SZ
jgi:Glov_0888   92 TGPTLHMLQGILNVATNdvfhe 113 Geobacter lovleyi SZ
Q088E6          87 LGPMVCSMFGFGEVLtshrtdg 108 Shewanella frigidimarina NCIMB 400
WP_012469017    87 LGPMLCALYGFGEIVssrrtdg 108 Geobacter lovleyi
WP_012238940    86 AGALLHTLQGFIRLApgdttpl 107 Sorangium cellulosum
jgi:Desgi_0640  87 AGPKMHTLEGIVHSTCESLEYD 108 Desulfallas gibsoniae DSM 7213
jgi:Desgi_2408  85 AGPLMHTLEGLVHASAKILEYD 106 Desulfallas gibsoniae DSM 7213
Q15NZ0         116 AGPTLHALMGWALVEPIELEID 137 Pseudoalteromonas atlantica T6c
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap