Conserved Protein Domain Family
TRAPPC13_N

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pfam06159: TRAPPC13_N (This model is not part of the current CDD release)
Trafficking protein particle complex subunit 13, N-terminal
Trafficking protein particle complex subunit 13 (TRAPPC13) is involved in regulating autophagy and survival in response to small molecule compound-induced Golgi stress. This entry represents the N-terminal domain, which may adopt a beta-sandwich fold with an insertion at the very N-terminal consisting of a short beta-strand and alpha helix connected by a long loop.
Statistics
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PSSM-Id: 517140
Aligned: 36 rows
Threshold Bit Score: 151.302
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_014175883  751 HPISLKVL---------RLSHPSLATQ---YPVAAplsTAlpPPTVPASIAYGGGgpds-------aatNTDPFLLSPVL 811 
XP_001420684   12 GAREGRAIddgddgddaRATRGARASGa-------------------------dAdadagrnddddarrRRERETTSGEL 66  
7_pfamImport    1 HLLVLKVM---------RLTRPSLATS---QIVTTeprDL--PGTLLNSYLKNETtsva----------gaetLGSSTLL 56  
XP_032517497    9 HLVALKVM---------RLTKPALISP---KIVTCdfkDL--PGNILNNFLKDDAtsvv----------qmetLAAGQFL 64  
Q7Q714          8 HLLALKVM---------RLTRPTLISP---QILTAepkDV--PQYSFQKILHSDAtsva----------gcetITAGQFM 63   Anopheles gam...
XP_002072516    9 HLLALKVM---------RLTRPALVAPg--PIVNCdlrDLlqP---FSNVQKKDKksev----------vgkpLTAGYIL 64  
XP_001900246    8 QILTLKVM---------RFARPKFYENi-cMPID--------PVDTTSQLIGSALcrltg--------qetaDIPIGKYL 61  
A5PLN9         10 HLLALKVM---------RLTKPTLFTN---IPVTCeekDL--PGDLFNQLMRDDPstvn----------gaevLMLGEML 65   human
EFX78950        7 QILSIKVM---------RLSRPVFTQPglfHPe---------PWDLVSTILSQEEnnvlte---dadqtLDKTFSSQFGL 65  
XP_002413194    9 QLLALKVM---------RLTRPSLFST---LPVVCdsrDI--PGSMWLQDLKQDLgapl----------glelFGTGSFL 64   black-legged ...
XP_014175883  812 NLPPSFGSAYVGETFACTLCANHDAadvedggwskekaaSavASIRDVQIEAEMKTPSAAepvkLVLGpetddgdgaglg 891 
XP_001420684   67 TLPQSFGAVALGERFSSFVTFGNFSept--------sgaS--GTAREIGIKVELQTETRR----TTLRdgt--------- 123 
7_pfamImport   57 LLPQCFGNIYLGETFTSYMCVHNIS--------------S--QVAKDATFKVSLQTNTNT----MDLStv---------- 106 
XP_032517497   65 LLPQSFGNIYLGETFSCYVCVHNET--------------N--QPVQSVSIKADLQTSSQR----IPLTtqq--------- 115 
Q7Q714         64 LLPQSFGNIYLGETFSSYVCVHNCR--------------A--HPVTNVSVKADLQSNNSR----VSLPiha--------d 115  Anopheles gam...
XP_002072516   65 LLPQSFGNIYLGETFSCYICVHNCT--------------A--HSVESVTVKADLQSNTSR----INLPine--------n 116 
XP_001900246   62 MAPQKFENIYLGETFTFYVCVQNIS--------------D--KFATDICIKTDLQTTSQR----NALSsql--------- 112 
A5PLN9         66 TLPQNFGNIFLGETFSSYISVHNDS--------------N--QVVKDILVKADLQTSSQR----LNLSas---------- 115  human
EFX78950       66 LLPQSFGTIYLGETFQSYLRVQNVG--------------S--CLVSNISIKADLQTAAQR----LPLTkrn--------- 116 
XP_002413194   65 MLPQSFGNIYLGETFSCYMSVHNDS--------------E--HTVRDVSVKAELQTDSQK----VFLTgks--------e 116  black-legged ...
XP_014175883  892 lhAGTDLASGQTLQKVVRFDLKEEGNHVLAVTVSYYEatETSGRTRTFRKLYQFIC 947 
XP_001420684  124 ktPIETLRPGEKVDLIVTKDLKELGAHTLVCSATYY---DAAGERKYSPQYFKFNV 176 
7_pfamImport  107 plASNDIEPGATVDQLINHEVKEFGAHILICEINYYCg-NLTSEPLTFRKFFKFEV 161 
XP_032517497  116 nqSPIMLDVDETLSDVIHHEVKDLGTHILVCEVTYM---SNYSTLASFRKFFKFEV 168 
Q7Q714        116 ktGPVTLNPEETLDDVIHHEVKEIGTHILVCEVSYM---TPAGLETSFRKFFKFQV 168  Anopheles gambiae str. PEST
XP_002072516  117 ckSSVMLAPDETLDDVIRYEVKEIGTHILVCEVNYT---SPAGFSQSLRKFFKFQV 169 
XP_001900246  113 qeANAVLKPGECLGEVITHEIKEIGQHILVCAVSYK---TPKNE-MYFRKFFKFPV 164 
A5PLN9        116 naAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYT---TQAGEKMYFRKFFKFQV 168  human
EFX78950      117 kvSINQLEPQQSTDDILSHEITEIGTHILVCEVSYQ---IGEGEQMTSSRYYKFQV 169 
XP_002413194  117 gtAVPELPPKSSIDEVIHHEVKDINTHILVCTVNYS---SHTGEKLHFRKFFKFQV 169  black-legged tick
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