6PPB


Conserved Protein Domain Family
Herpes_capsid

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pfam06112: Herpes_capsid 
Gammaherpesvirus capsid protein
This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.
Statistics
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PSSM-Id: 399248
Aligned: 5 rows
Threshold Bit Score: 153.697
Threshold Setting Gi: 82013701
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6PPB_0   2 SNFKVRDPVIQERLDHdyaHHPLV-ARMNTLDQGNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTLRdq 80 
Q66667  16 GYQPLRLPRVQGKLEE---INPIVaAEVAALERRDRSDADYEKVKMLYVIYLRVHEIYDDQARIRLGVRRKKHLGDLT-- 90  Equid herpesvirus typ...
O36415   2 AHARPKLPRINLRLDAeypNDPRV-QQLHLQILNNPNYANNVRAPLSYLVFLTAQEMYEVFVRQARGVNKKRSGGpekp- 79  Alcelaphine herpesvir...
Q01047   2 HRLRVTDPVVQGKLEEsdsTHELV-KRLEILPQNNMTPEEYTLMKRNYLVFLIAQYNFDQYIETTHGIKRKKHIEGLKan 80  Herpesvirus saimiri (...
Q2HR63   2 SNFKVRDPVIQERLDHdyaHHPLV-ARMNTLDQGNMSQAEYLVQKRHYLVFLIAHHYYEAYLRRMGGIQRRDHLQTLRdq 80  Human herpesvirus 8 s...
6PPB_0  81 kp-rerADRVSAASAYDAGTFTVPsrPGPASGTTPGGQDS----LGVSGSSI-----------TTLSSGPHSLSPASDIL 144
Q66667  91 ------ASRGAGLRSFEALSSMIPlpPETGEFDTGGTSSSvrsaSGASGGAA-----------STAASGGSASAAASGAS 153 Equid herpesvirus typ...
O36415  80 ---ilpANPGAG--------------PQNAPGCGGGGSGSg--gSGPPGGSApqiqppnngvpSNQVSSNSGSAAGSGSG 140 Alcelaphine herpesvir...
Q01047  81 lkpsalSADSASLSGLLSTSLTTP----------------------------------------SLSSTPTSLTSMPGLS 120 Herpesvirus saimiri (...
Q2HR63  81 kp-rerADRVSAASAYDAGTFTVPsrPGPASGTTPGGQDS----LGVSGSSI-----------TTLSSGPHSLSPASDIL 144 Human herpesvirus 8 s...
6PPB_0 145 TTLSSTTETAAPAvADARKPPSGK-K 169
Q66667 154 GGSASQSDVSSRS-RSQQAPGTKGkK 178 Equid herpesvirus type 2 strain 86/87
O36415 141 SGASSNSGAGSGAgAGSSACPSSG-A 165 Alcelaphine herpesvirus 1 strain C500
Q01047 121 ISGPSTTDT-----IDSKKKP----K 137 Herpesvirus saimiri (strain 11)
Q2HR63 145 TTLSSTTETAAPAvADARKPPSGKkK 170 Human herpesvirus 8 strain GK18
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