Conserved Protein Domain Family
Aph-1

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pfam06105: Aph-1 
Aph-1 protein
This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity. APH-1 proteins have a similar but different set of motifs as compared to other families. Their four motifs are: QExxR, Fxxxx, Hxxxs and Hxxxs respectively. Given the inferred homology between APH-1 and other membrane proteases such as type II CAAX proteases and PrsW proteases, it is speculated that APH-1 may possess protease activity.
Statistics
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PSSM-Id: 488144
Aligned: 43 rows
Threshold Bit Score: 203.939
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q55FS3         3 QVLFYGCLFITFSPILAFFFMVIAKNSQLVILTIGGSFFWLVSILIAAIWWYIIPPMREH----WWFIISFSVLFQEIFR 78  Dictyostelium d...
Q8L9G7         3 VAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLKANvwwpYALLVITSVCFQEGLR 82  thale cress
XP_006347279   3 VAAGIGYALLALGPSLSLFIALISKKPFLILTLLSSTLVWLMSLIVMSALWRAFLPLKTTawwpYAILILTSVGFQEGLR 82 
XP_015623034   3 VAAGLGYALVALGPAFSLFAGVVARKPFLVLTLLTSTLFWLISLIILSGIWRVFLPIRSGawwpYAILILTSVAFQEGIR 82 
XP_009416016   3 VAAGFGYVLISLGPALSLFVSVIAKKPFLILTLLASMLFWLISLIVLSGAWRGFLPLKSAswwpYVILIVTSVGFQEATR 82 
XP_024393748   3 LVAGFGYFLIALGPALTIFGSSVAPKPFLILTVLASALVWLASLNIAAIVWRAFLPGPSw---vFLLILTTSVALQEAFR 79 
XP_002976250   3 VASGVGYTLIALGPGFSLFFLSIVSKPLLILTLLASTLVWLASLVALAIVWRGFLPLGSSdw-iCLPLLASSVALQEFLR 81 
XP_004998769   3 QATLWGSLFIIFSMPLAIFWFVVRRSPKLVIVLVASAFMWLLAALLTGIIWIIIPPLQDD----YWFVILISVPIQEAFR 78 
XP_003291659   3 QVLFYGCLFITFSPILAFFFLVIAKNSQLVILTIGGSFFWLVSILLSAIWWYIIPPMREQ----WWFTIPFAVVFQEAIR 78 
XP_018645655   3 CLGGVGCTLIGVGPCLILFLCTVANCPIKVILLTASGFFWLVSLLITSVMWFIVTPLRAY----LAFGILIGVLIQEILR 78 
Q55FS3        79 YIFFRL---YSYGFNDRPSLNQIKETQHQMaldsmrkrkqaqqqkqqpptneiesinneiidttnnntnnnnnnnnnind 155 Dictyostelium d...
Q8L9G7        83 FLFWKVykrLEDVLDSFAD----RISRPRLfltd---------------------------------------------- 112 thale cress
XP_006347279  83 ILFWKVykkLEDILDAFAD----RVSKPRLfmtd---------------------------------------------- 112
XP_015623034  83 LVFWRLykkMEEMLDSFAD----RISKPRLcltd---------------------------------------------- 112
XP_009416016  83 LIFWKLykkLEVILDAFAE----EKFRSRLswtd---------------------------------------------- 112
XP_024393748  80 LLYWHLylkIEKYLNVLAT----KLSKPQCnyld---------------------------------------------- 109
XP_002976250  82 VHFWRTfkkVESSLNGVAV----RISKPPLrpse---------------------------------------------- 111
XP_004998769  79 YFFWKMlhkAEKGLSTLTPDGDVVITREKL-------------------------------------------------- 108
XP_003291659  79 YLFYRL---YSWGFNDRPSLNQIKETQHQMsldqmkkrkqvktsyqnenynndndnnnnnnndddtfsidn--------- 146
XP_018645655  79 FLFFLLifkAESGLQLIVSSSTTPVSRPQLvdginndniidnhshgreaernevsnltrnrkisss-------------- 144
Q55FS3       156 ddnkeiteeekekrkiekqkqreieinarletlsarpnhtlsSAAIGVGSGVAYGFIMFGSILWESTGPGTLFSPAcPSV 235 Dictyostelium d...
Q8L9G7       113 --------------------------------------klqiALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVERcSKV 154 thale cress
XP_006347279 113 --------------------------------------kmqiALAGGLGHGVAHAVFFCLGLLTPAFGPATYYVEKcSKI 154
XP_015623034 113 --------------------------------------kmliSLAGGLGHGVAHAVFFCLSLLTPAFGRATFYVEKcSRM 154
XP_009416016 113 --------------------------------------kmqiALAGGLGHGVAHAVFFCVSLLTPSFGPATFFVDRcSHM 154
XP_024393748 110 --------------------------------------rleiALASGVGHGLAHAVFFGLSIIAPAFGPATYYTSScKQM 151
XP_002976250 112 --------------------------------------kieiAIALGFGHGLAHSIMFCLSLLTPAFGPGTFYLRScPQM 153
XP_004998769 109 ------------------------------------------WFVSGLGFGVMSAVMMMSNMLDIMTGPGMVPARGcPDF 146
XP_003291659 147 --kndsdendndkseskesdkaevvinnrletlsarpnhtlsATAIGVGNGTAYGFIMFGSILWESTGPGTMFSPAcPTV 224
XP_018645655 145 ------niiitndydhnilndnnsgdinnnnnhaiqldhltvAYVSGLGYGLMSCIIQSLRILIDSYGPGITIYSTwNSR 218
Q55FS3       236 NLFMLSSIITLFMTLLHVVYNVLAFQGYRSKK-----Y-----HLVAFVIITHFVTTYLTLL-NLPTkttSCVGSILPIG 304 Dictyostelium d...
Q8L9G7       155 PFFLISAIIALAFVTIHTFSMVIAFEGYAKGN-----K-----VDQIIVPVIHLTAGMLTLV-NFASegcVIGVPLLYLV 223 thale cress
XP_006347279 155 PFFLVSAIIALAFATIHTFSMVIAFSGYEEGN-----K-----VDQCFAPVVHLIAGMLTLT-NLAFggcMIGIPLLYCV 223
XP_015623034 155 PFFLVSAIISLGFLVIHTFSMIIAFNGYDERK-----R-----SDQVFVPVVHLIASVMTLI-NLAPggcVIGTPLLCVM 223
XP_009416016 155 PFFLVSAIISLGFMIIHTFSMVIAFNAYAEGR-----K-----LDQIIIPIIHILAAVMTLI-NLAPggcAIGVPLLYII 223
XP_024393748 152 PLFLVSALSSLAFFLLHTFSMVIAFNAYTYDN-----I-----SQKLFVPIMHLGAALLTLV-NLLPngcTAGVPLVFLC 220
XP_002976250 154 PFFLVISLISLGFLLIHTFSMVIFFKGYEDHN-----S-----GLRFFVPAMHAVASSLTLV-NLVQngcVIGTPLVMLC 222
XP_004998769 147 NLFTISALVSAAIVMCHAFWGVIAGKAWEQRTisksmFipsrdWKLFFVLAMHYFVAFLTIDaDKT----TCVGFLLPIY 222
XP_003291659 225 NLFMLSSIITLCMTILHVVYNVLAFQGYRSRK-----Y-----HLVVYVVIVHFLTSFLTLL-NQPSk--SCIGSVLPIS 291
XP_018645655 219 TFFLFSSCQCMCISMLQVFWSLILFSAFVQRA-----Y-----GQIILVYFMHFGLAGMSLI-NTYSs--PCSEIVCAIY 285
Q55FS3       305 IITVF--SVGFCIFSLL 319 Dictyostelium discoideum
Q8L9G7       224 ASLTLvhCGKMVWQRLL 240 thale cress
XP_006347279 224 AIVTLvhCGKMAWrrli 240
XP_015623034 224 GAVTLqyCWQMVWrrls 240
XP_009416016 224 GGVVLrhCWQMVWrklt 240
XP_024393748 221 TALTMayGGKIVWhnlg 237
XP_002976250 223 AALTLfvCGKSLWqkgd 239
XP_004998769 223 GATLL--CACTAWFVIR 237
XP_003291659 292 LITIF--SVCFCLYSLl 306
XP_018645655 286 MICLIgmiifaycrfhs 302
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