6G7G


Conserved Protein Domain Family
Self-incomp_S1

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pfam05938: Self-incomp_S1 
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Plant self-incompatibility protein S1
This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties.
Statistics
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PSSM-Id: 399142
Aligned: 184 rows
Threshold Bit Score: 46.8561
Threshold Setting Gi: 947091797
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6G7G_A         8 EIVIKNTLGPS-RILQYHCRSG--NTNVGVQYLNFKGTRIIKFKDD-GtERSRWNCLFRQ---GInmkFFT-EVEAYRPD 79  thale cress
EEF41296      34 HVHVVNGLSPG-KILFVHCKSA--DNNLGGYNVGNGQEFSWSFKMNfL-RRTLYWCRMAP---DN---QSYaDLKVFWDD 103 castor bean
EEF41294      29 HVHIINEMKNH-KFLHVHCKSK--DDDLGIHHLQHGQQYSWHFNINiF-ATTLFWCYMSP---DH---KLHaRFDVFWDA 98  castor bean
EEF41295      25 yVHITNELSHN-KVLHVHCKSK--DDDLGIHQLPRSQHYSWRFNLNfF-ATTLFWCYMAP---DS---NSHaNFKVFWKS 94  castor bean
XP_002522115  77 GVHIINGL--RtRVLLSHCKSEddDDDLGINKISIGNEFSWEFTVS---GATVYWCYLAP---DS---NSHvNIRVFWNN 145 castor bean
XP_006384775  34 KVNIVNQLSHN-KRLFVHCKSK--DDDLGPHHVQSKDRFVFRFVENfYwATTLFWCSMSK---DR---KSYaSFDVFWSA 104 black cottonwood
XP_002312833  24 TVRIVNRLSNK-KVLFAHCKSG--DDDLGPQYIKTRDEFKFSFRVNfF-RTTLFWCNMSK---DK---KSHaSLDVFWSF 93  black cottonwood
XP_013683342  42 QVMVVNGLATS-ETLFIHCKSK--EDDLGEHTLRLGDRFSWNFGENmL-HSTLFWCYLSK---DD----GHmNVQVFWDD 110 rape
F4JLS0        42 QVTVVNGLTTG-ETLFIHCKSK--EDDLGEINLKFRNRFSWNFGENmL-HSTFFWCYMNK---DN----GHmNVNVFWDD 110 thale cress
KRH19669      58 HVYIVNGLRNN-QNLLAHCKSA--DDDLGVRNLSQGSNFTWSFRTDfA-HSTLFWCHVKKdnnNA---CESaTFDVFWYD 130 soybean
6G7G_A        80 L-KHPLCGKR----------YELSARMDAIY 99  thale cress
EEF41296     104 KhLLDSCGDDh--------qCIWIAKDDGVY 126 castor bean
EEF41294      99 KyLYDRCGPHd---------CWWVAKDDGAY 120 castor bean
EEF41295      95 GyMDDRCAGHh---------CYWVAKDDGAY 116 castor bean
XP_002522115 146 RhFYQNCDKYd---------CSWIAKDNGVF 167 castor bean
XP_006384775 105 D-NHEKNKNFnlqgltgtreIIWLVRDDGIY 134 black cottonwood
XP_002312833  94 S-NAGKHGGFdlstwavneeALWIVRDDGIY 123 black cottonwood
XP_013683342 111 ViLFHRCGWKk---------CVWTAKTDGLY 132 rape
F4JLS0       111 ViLFHRCGWKn---------CIWTAKTDGLY 132 thale cress
KRH19669     131 ErLFQKCDWKk---------CIWSARDDGIY 152 soybean
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