7JQQ


Conserved Protein Domain Family
Podovirus_Gp16

?
pfam05894: Podovirus_Gp16 (This model is not part of the current CDD release)
Podovirus DNA encapsidation protein (Gp16)
This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyzes the in vivo and in vitro genome-encapsidation reaction.
Statistics
?
PSSM-Id: 517019
Aligned: 3 rows
Threshold Bit Score: 386.764
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
7JQQ_A         1 MDKSLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKVSNYFNDVAQEFPDHELVV 80  Salasvirus phi29
1_pfamImport   1 MDKSLYYNPNELLSKNRIMNFVIGARGIGKTYGFKKYVINRFLKTGKQFIYLRRYKSELAKVANFFNSLKHEFEGVDFKV 80 
P11014         1 MDKSLFYNPQKMLSYDRILNFVIGARGIGKSYAMKVYPINRFIKYGEQFIYVRRYKPELAKVSNYFNDVAQEFPDHELVV 80  Bacillus phage ...
7JQQ_A        81 KGRRFYIDGKLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRCICLSNAV 160 Salasvirus phi29
1_pfamImport  81 KGRMFFINDKLAGWAIPLSSWQAEKSTDYPDVETILFDEFIREKDNSRYLPDEVKALLNFMDTVIRIREGSRLIGMSNSV 160
P11014        81 KGRRFYIDGKLAGWAIPLSVWQSEKSNAYPNVSTIVFDEFIREKDNSNYIPNEVSALLNLMDTVFRNRERVRCICLSNAV 160 Bacillus phage ...
7JQQ_A       161 SVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKTRFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKF 240 Salasvirus phi29
1_pfamImport 161 SIVNPYFLYFSLVPNISKRFNLYESIAVEIPPSADFVEERKKTSFGKLIEGTDYAKMAMDNQFIGDNYTFVEKRSKESDF 240
P11014       161 SVVNPYFLFFNLVPDVNKRFNVYDDALIEIPDSLDFSSERRKTRFGRLIDGTEYGEMSLDNQFIGDSQVFIEKRSKDSKF 240 Bacillus phage ...
7JQQ_A       241 VFSIVYNGFTLGVWVDVNQglMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRN 320 Salasvirus phi29
1_pfamImport 241 VFAVKYGNKTMGIWVDGYN--MYVSEAYDPYTKHLFVIRKEDMTDNSKLVRSSRHEYRMGKLLSAFEKGMLRFDNLECRS 318
P11014       241 VFSIVYNGFTLGVWVDVNQglMYIDTAHDPSTKNVYTLTTDDLNENMMLITNYKNNYHLRKLASAFMNGYLRFDNQVIRN 320 Bacillus phage ...
7JQQ_A       321 IAYelfrKMRI 331 Salasvirus phi29
1_pfamImport 319 VDH----KQTV 325
P11014       321 IAYelfrKMRI 331 Bacillus phage phi29
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap