Conserved Protein Domain Family
GpA_ATPase

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pfam05876: GpA_ATPase 
Phage terminase large subunit gpA, ATPase domain
This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, TerL (gpA), products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA during the DNA packaging process. TerL contains all the catalytic activities required for for DNA maturation and packaging. At the N-terminal (represented in this entry) reside the DNA translocase (packaging) and ATPase activities, while at the C-terminal resides the DNA maturation (nuclease/helicase) catalytic activity.
Statistics
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PSSM-Id: 488014
Aligned: 21 rows
Threshold Bit Score: 266.872
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012205268   41 GSPKTSWSPTETPYMVEPADALASRRHEAVVFVGPARTGKTAsLLLGWMSHTVVNDPGDMLFVQMSKDKAREFSKTDVDR 120  Delftia acido...
Q3IVP6         56 qGNWVPFDRAVTPYTVEPADMTQSRRFKAVVFLGPSQSGKSQ-MMQSVSAHAVTCAPGPVQVIHMTKTDADAWVEEKLDP 134  Rhodobacter s...
Q8ZQH1         42 ANTAVPWDDTLTPYMNEAINTLSKREYDAVIFAGPARTGKTLgLIDGWIVYGIVCDPADMLVVQMTETKAREHSKTRLAR 121  Salmonella en...
Q8ZQ96         52 AGNSVAWESTLTPYVVEAMNCLSSRSYDAVVFVAPARTGKTLgLIDGWISYNIVCDPSDMLVVQMTQDKAQEHSKRRLAK 131  Salmonella en...
WP_012206486   47 SHQKGGWVA--WPFQIGILDFMSDDRIEELAVKKSKRVGYSK-MITAFVCYNIAHRRRKQALWQPTDDDRDSFVKTEIEP 123  Delftia
1_pfamImport    1 SAMRGPI--RLYPFQRGMADAMSDSKIERITVVKSARIGYTT-LLVGLLGSHVVNEPAPVLFVLPTEDDCRTFVVSNVEP 77  
2_pfamImport    1 SSLTGRV--RLWPPQREIADAIGDSALERVTLVKPVRVGFTT-LLTSAMASFCSNDPSPILSLLPTEADCRDYMVSDVEP 77  
Q1QI78         24 AALAGKV--RLYPFQREIADAIGDPTIERVTLVKPVRVGFTT-LLTGAMAGFCANDPAPILSLLPTESDCRDYMVSDVEP 100  Nitrobacter h...
WP_011801643   52 SALKGRFAWDVSPALKGIADAASLPGTRKIAVQKSAQVGYTAgIVCNIIGYNVHYRPSVIVAAFPRAQAAKDFASEKLDP 131  Polaromonas n...
Q1GH31         46 NAVPGKMRFDNAPYQREVIDMTADPRCNRISLMWGAQVGKTQ-TALAAQAYRIGFNPVSQMMMQPSQGDLTTWLETKFNP 124  Ruegeria sp. ...
WP_012205268  121 AIRYSPKVQAMKSD----RAVDSNTFDTMFRHGMWVRIAWPTVGNVSGSTYRYVAITDIDRIenAENV-----DGEGPLF 191  Delftia acido...
Q3IVP6        135 TILNSPALRERLGT----GRDDSTFSRKRFK-GMRLTIGYPVPNQLSSRSQRLVMLTDYDHM--PQKLgp-kdSPEGSPF 206  Rhodobacter s...
Q8ZQH1        122 TFHHSPEVRKRLSP----SRNDNNVHDKMFRDGSFLKIGWPSITVFSSSDYKRVALTDYDRF--PENI-----DGEGDGF 190  Salmonella en...
Q8ZQ96        132 MFRHSPAIARRLSP----HRNDNNVHDKTFRDGSFLKIGWPSINVFSSSDFKCVALTDYDRF--PEDV-----DGEGDAF 200  Salmonella en...
WP_012206486  124 LLDSKDGVPSVIAArkqgSRVEETIKYKPFRDSVLHLLGGKAARAYRRITVAVAILDEWTAF--DQTIggskdKSAGSPG 201  Delftia
1_pfamImport   78 TFEASPCLANALASdk-gSEKRNTLLSRRFPGGSLKVIAAKAPRNLRAHNARILIMDETDGM----EM-----TKEGSPI 147 
2_pfamImport   78 IFDASPALNGLLTGdv-dEGGRNTLLSRRFPGGFLKVIAAKAPRNLRRHNVRILFIDEADGM----SA-----TKEGSPI 147 
Q1QI78        101 IFAASPSISNLLSGdl-dEAGRNTLVSRRFPGGSLKVVAAKAPRNLRRHNVRVLFIDEADAM----EP-----TADGSPV 170  Nitrobacter h...
WP_011801643  132 MILSTPVLSKRIALk--sRAQGNSMLRKRFPGGLIKLVGTNSPSDVKSTSARLVVVEEPDDA--SNNV-----KGQGNSL 202  Polaromonas n...
Q1GH31        125 LVEENEDLAELIAKpr-gRQGVNNQRMKSYPGGFLMFSWSGSPKTMRGRSAPFIVCDETDGY----DR-----TNEGHPV 194  Ruegeria sp. ...
WP_012205268  192 DLAKKRTTTFLSRGMTLVESSPGYPLedpswqpa----tpheappTGGILSLYNRSDRR-RFYWRCLDCRAWFEaapgLS 266  Delftia acido...
Q3IVP6        207 GMALQRIRTFMSRGCVLAETSPAFPVdpnadwaphaghphmlppaTAGLVPIYNEGTRG-RWYWECPDCGDLFE----PR 281  Rhodobacter s...
Q8ZQH1        191 SLASKRTTTFMSAGMTLAESSPGREItdvkwrrs----spheappTTGILSLYNRGDRR-RWYWPCPHCGDWFQpameNM 265  Salmonella en...
Q8ZQ96        201 SLASKRTTTFMSLGMTLVESSPGREItdtrwkps----spheappTTGILSLYNRGDRR-RWYWPCPHCGEYFQpsmaNM 275  Salmonella en...
WP_012206486  202 TLAKGRLEGA-PYPKFIGGSTPGIKG-------------------LCHVSRACEDSDDEvDYLIECPRCEAEHP----LT 257  Delftia
1_pfamImport  148 PIAERRTMSF-PDRKIIIGSTPIYED-------------------SSHVLSAYERSDKR-IYEVPCPECGDFHE----IE 202 
2_pfamImport  148 LLAERRTLSF-ADRKIVMGSTPVYEE-------------------TSHVLQSYEQSDKR-IYEVPCPECGHFHE----IQ 202 
Q1QI78        171 VLAEDRTISF-PDRKIIMGSTPRFME-------------------TSYVLAAYAKSDQR-IYEVRCPECDEFHE----IQ 225  Nitrobacter h...
WP_011801643  203 KLLEERAKTY-NDHLILIGGTPTAKD-------------------ASAIEDEMKKSDKR-YFHVPCHSCGEAHV----LA 257  Polaromonas n...
Q1GH31        195 GLLWQRAATFGDQRLLLEISTPTIKG-------------------GSWIEKSFEAGDQR-YFYVRCPHCGHLQR----LN 250  Ruegeria sp. ...
WP_012205268  267 lFKRlpaikqLLEeirtMDIPt-------mAKHYGQVAC--PHCGSEPGHQMKGAln-rA-----GI-----W 319  Delftia acidovorans
Q3IVP6        282 -FDR------LHYdadlDPGA---------AGEQAMMEC--PHCGTLIAHRHKVGlnraAle-grGG-----W 330  Rhodobacter sphaeroi...
Q8ZQH1        266 ----------VGYrdnpDLMA---------ASEAARIQC--PHCRALIQPEQKRGln-nR-----GV-----W 306  Salmonella enterica ...
Q8ZQ96        276 ----------TGYrhiaDPME---------ASEAARIQC--PHCHKLTEPQQKREln-nR-----GV-----W 316  Salmonella enterica ...
WP_012206486  258 -WGGkevmhgFKW----EAG----------KPETVRHMC--PHCRESISQAEYLP----GgwpltGA-----W 304  Delftia
1_pfamImport  203 -WKD------IHW----PEG----------EPEKAHWAC--PGCGSVVEERYKGS----Mva--aGR-----W 241 
2_pfamImport  203 -WSD------IQW----PEG----------EPEKAYYVC--RECGSVIDERHKPG----Mva--nGR-----W 241 
Q1QI78        226 -WKD------IHW----PEN----------EPDKAAWCC--PGCGVEIGEKHKAA----Mva--aGR-----W 264  Nitrobacter hamburge...
WP_011801643  258 -WEN------VTIpk-aPEGTaprevygalRWEEAFYTC--PHHGCVWTDDERIA----Nlr--rAEsagagW 314  Polaromonas naphthal...
Q1GH31        251 -WSQ------VTW----SKDAdg-----lhLAETAGYLCvgEGCGTVWSDGERVA----Air--nAErdgggW 301  Ruegeria sp. TM1040
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