Conserved Protein Domain Family
YopD

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pfam05844: YopD 
YopD protein
This family consists of several bacterial YopD like proteins. Virulent Yersinia species harbour a common plasmid that encodes essential virulence determinants (Yersinia outer proteins [Yops]), which are regulated by the extracellular stimuli Ca2+ and temperature. YopD is thought to be a possible transmembrane protein and contains an amphipathic alpha-helix in its carboxy terminus.
Statistics
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PSSM-Id: 283498
Aligned: 3 rows
Threshold Bit Score: 405.157
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O68699  14 TGSQLDAITTETVKQSGEIKKTEDTRHEAQAikSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELA 93  Yersinia pestis KIM10+
Q7N0X4   6 NASSQGVTSSNGVEVGTDNFVSTPTAHEAAI--QQPEKTRLTDKVELIVPKQGLDPSRLGNVGQELNNTLDMMSLLFEIA 83  Photorhabdus laumondi...
Q9I323   8 LAATQAAIPSEPIAPGAAG-RSVGTPQAAADlpQVPAA--RADRVELNAPRQVLDPVRMEAAGSELDSSVELLLILFRIA 84  Pseudomonas aeruginosa
O68699  94 RKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQ 173 Yersinia pestis KIM10+
Q7N0X4  84 KRMRELGILQRDTENKASIDAQKSQVDEMRHGAKLMIAMAVVSGLMTLGSGLIGSFSSVKNSQAVKQQKTLESNIAGRNK 163 Photorhabdus laumondi...
Q9I323  85 QKARELGVLQRDNENQSIIHAQKAQVDEMRSGATLMIAMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNIDGRNE 164 Pseudomonas aeruginosa
O68699 174 LIDTKMQQMSNIGDKavSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEV 253 Yersinia pestis KIM10+
Q7N0X4 164 LIESKLQQLGKSSDA--DRAAIGKVWNVAQDADKSTLKSLTLVFESRNSNQQLLTSVMKSLEGMSNNSVQVEQGLSQAKA 241 Photorhabdus laumondi...
Q9I323 165 LIDAKMQALGKTSDE--DRKIVGKVWAADQVQDSVALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASA 242 Pseudomonas aeruginosa
O68699 254 KEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV 306 Yersinia pestis KIM10+
Q7N0X4 242 KEHEVGSSIAQHEKQKSEDQISLNNNFMKDVLQLLQQLYQNHVQALRAATGVV 294 Photorhabdus laumondii subsp. laumondii
Q9I323 243 REGEVNATIGQSQKQKVEDQMSFDAGFMKDVLQLIQQYTQSHNQAWRAAAGVV 295 Pseudomonas aeruginosa
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