Conserved Protein Domain Family
Apo-CIII

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pfam05778: Apo-CIII 
Apolipoprotein CIII (Apo-CIII)
This family consists of several mammalian apolipoprotein CIII (Apo-CIII) sequences. Apolipoprotein C-III is a 79-residue glycoprotein. It is synthesised in the intestine and liver as part of the very low density lipoprotein (VLDL) and the high density lipoprotein (HDL) particles. Owing to its positive correlation with plasma triglyceride (Tg) levels, Apo-CIII is suggested to play a role in Tg metabolism and is therefore of interest regarding atherosclerosis. However, unlike other apolipoproteins such as Apo-AI, Apo E or CII for which many naturally occurring mutations are known, the structure-function relationships of apo C-III remains a subject of debate. One possibility is that apo C-III inhibits lipoprotein lipase (LPL) activity, as shown by in vitro experiments. Another suggestion, is that elevated levels of Apo-CIII displace other apolipoproteins at the lipoprotein surface, modifying their clearance from plasma.
Statistics
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PSSM-Id: 487960
Aligned: 15 rows
Threshold Bit Score: 94.4951
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P27917        22 EAEDTSLLD----KMQDYVKQATRTAQDALT-SVKESEVAQQA-----RGWVTDSISSLKDYWSTFKGKFT--DFWDYTP 89  pig
3_pfamImport   1 QSEDASLLD----VMQGYVHHAAKTAQDALT-SVQESQMAQHAndlipRDWVTGGFTSLQDYWSTFKGKLS--RLWESTP 73 
P19035        22 KAEEGSLLD----KMQGYVKEATKTAKDALS-SVQESQVAQQA-----RDWMTESFSSLKDYWSSFKGKFT--DFWESAT 89  domestic cattle
NP_001003369  22 EEEDPSLLG----LMQGYMQHATKTAQDTLT-SVQESQVAQRA-----RGWMTDSFSSLKDYWSTFKGKFT--GFWDSAS 89 
XP_003992504  22 EGEDPSLLG----LMQGYVQHATKTAQDTLT-TVREFPVAQQA-----RAWVTGRFTSLKDYWSTLTGKFS--GFWDSTF 89 
P33622        22 EVEGSLLLG----SVQGYMEQASKTVQDALS-SVQESDIAVVA-----RGWMDNHFRFLKGYWSKFTDKFT--GFWDSNP 89  house mouse
G5BQH4        22 ETEDASLLGymqdYMQGYMEHASKTAQDALT-RVQDSQMAQQA-----RGWMSDSLSSLQDYWSSFKGKWSgfGFWDATP 95  naked mole-rat
Q9Z2R5        22 EIQESSLLG----VMKDYMQQASKTANEMLT-KVQESQVAENA-----REWMTESLDSMKGYWTSLIGRLS--GFLDSTP 89  domestic guinea...
2_pfamImport   1 DPKDASLLS----VMQGYVQHATKTAHDALS-SMQESQMAQQA-----RGWVDAGISSLKGYLSTFA------------- 57 
XP_023600078  22 EADEDSLLK----LMQDYVQQA----QEALTsSVKDLSMAQEA-----SKWMSNGFNSLKDYWSSLTVPLS--NLWPLAP 86 
P27917        90 K 90  pig
3_pfamImport  74 E 74 
P19035        90 S 90  domestic cattle
NP_001003369  90 E 90 
XP_003992504  90 A 90 
P33622        90 E 90  house mouse
G5BQH4        96 E 96  naked mole-rat
Q9Z2R5        90 S 90  domestic guinea pig
2_pfamImport     -    
XP_023600078  87 G 87 
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