Conserved Protein Domain Family
REF
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pfam05755: REF (This model is not part of the current CDD release)
Rubber elongation factor protein (REF)
This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown.
Links
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Statistics
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PSSM-Id: 516964
Aligned: 28 rows
Threshold Bit Score: 237.174
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
XP_010234141  20 EGRPRLRRLEFVHVAAAQAALCLAGLYALARDHSGPLRPGVDAVESAVRGVAGPVVGRFKDVPLHVLAFVDRKVDGTVQE 99 
XP_002988793  12 TQEPKLKYLGFFQAALIKVTVVIASLYEFAKENSGPLKPGVDSVEGTVKTVVAPVLHKIEGRPAELLILVDSKVDEIVTA 91 
XP_024403816   5 AKSADLKYLGLVHALVLQAAAYLATLYAYAKDSSGPLKPSVDNVEGTVKTVVGPVYQKVEGKPLQLLQYVDSKVDETISY 84 
XP_006848356   7 PQDLELKYLGFIKIAAIKAIICILSLYEYAKGNSGSIRSHIDKVEGHVKTVVGPVYEKVNGVPLNILKFIDGKVDENLGN 86 
XP_006352188  10 KSEVNLKHLGFVRVLALNTAVLVSNLYDYAKQNSGPLRSTVGTVENAVTTVVRPVYERFKGVPDEVLVFLDKKVDDGTAK 89 
1_pfamImport   2 MEKRELKHLGFVRIAAIQALVCVSNLYYYAKQNSGPLRSTVGAVEDAVTAVISPVYDKFKGVPDHLLVFMDKKVDEVSAK 81 
XP_009105122   8 SQELGLKHLGFVRVAAIHVLVSLSSLYDYAKQNSGPLKPAVGKVEGAVTTVVTPVYNKLKNVPDTLLLFLDHKVGEASDK 87 
NP_001235682  13 KSEEELKHLGFVKIAAMKALVCVSNLYGFAKQNSGLLRSAVGTVEDTVTTVLGPVYHKFNAVPNHILLFVDNKVDEAAHK 92 
XP_002514917   7 MNSKELKHLGFVRMVAVQTLVCVSNLYDYAKQNSGPLRSTVGTVETAVTTVVGPVYQKFKDLPDHLLVFVDNKVDEGTQK 86 
XP_002297837   8 RKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEKFKGVPDHLLVFLDHKVDEATIK 87 

XP_010234141 100 LDKHLPSSLKAASARAYAAaqgvpeaareiTSEAQRSGLSGAArvaygkvepvakdvlgkiepaaKDLYTRYEPAAEHLA 179
XP_002988793  92 LKNSLPQFVKERSQQAYDIvtqapeaarsvVGDVQKRGVYESA----------------------RDYYNKYEPVAEEWS 149
XP_024403816  85 VDGVVPKYVKDKSYQALDVakqapdaarglVSDVQSRGVYSTA----------------------SSLYERYEPVAEQLT 142
XP_006848356  87 IQQYAPEFVKGFYSKASSVarkapelyekvATDIKERGAAKVG----------------------KEACAKYKPIVEDYA 144
XP_006352188  90 FDERAPPLAKKVVSKIQSLfqkasevaqdlSKDIQEAGPRAAI----------------------YHAGELSKQFATSRV 147
1_pfamImport  82 FDKHAPPVAKEVVGQAQCLvlkasktaqtlVSEAKAGGPSAAL----------------------QHAATAYKLFMLTQL 139
XP_009105122  88 FDKHAPPVAKKVVSRANVLiqtttekaqrfVKEARTGGPRGAF----------------------NYAAAEYKCFLVTNS 145
NP_001235682  93 FDEHAPSLAKQVASQVTCLvqevthkaekvVSEAQSGGARAAA----------------------NYVATESKQIVLFGS 150
XP_002514917  87 FDKHAPPVAKQVASQAQTLmqvalqkvqelVNEARVGGARAAV----------------------HFAAKESKHLALTQS 144
XP_002297837  88 FDKRAPPVAKQVVSQARYLiekasekakvlANEFQAGGPRAAV----------------------HYVSTESKHLFLTES 145

XP_010234141 180 VSTWRALNGLPLFPHVAQIVVPTAAYWSEKYNSVIASAAQQGYTGARYLPAIPTERIAKVFGE 242
XP_002988793 150 YSAWTAALKLPVVPQVVHLTAPVALFGVEKFNSLVVVLKENNVPLAAYVPELPLEKIQRAVEm 212
XP_024403816 143 FEAWQKLLTLPLVPQAVNVAAPAAKFGVVQYNKLAEILKSKNLPLTAYIPVVPIEKLEKAMKp 205
XP_006848356 145 IKACFQLQRLPFLAQVAQVAGPTAGFLCFKYNHLVS----KGYAPFCYLPRFPLEEIIKAIng 203
XP_006352188 148 AVLWFYVNHCPPLHGIAQMAAPTAANWSEKYNHFVADLQEKGYSIVSYIPLIPVEEISKAYKQ 210
1_pfamImport 140 VKLWFILNKVPLFHTVADMAVPTAAHWSDKYNHVVTDMSVKGYTIFGYFPLVPIDKIAKTFKQ 202
XP_009105122 146 VRVWAKLNRFKPIHAVGNKAFPVAAHVSGIYNDLVTDMTQMGYPVVGYLPLVPVDDIVKAYEK 208
NP_001235682 151 VKLWTGLNHYPPFHAVAEMAVPTAAHWSEKYNNVVKGTSEKGYAVFDYLPLIPIDDIAKAFKH 213
XP_002514917 145 VKVWIKLNQFPAVHTVADMAVPTAAHWSEKYNHVIKDMTQKGHTLFGYLPLVPVDEIAKAFKQ 207
XP_002297837 146 VKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQKGYVVFGYLPVVPVDEISNAFKQ 208
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