pfam05708: Peptidase_C92 (This model is not part of the current CDD release)
Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in Bacilus Permuted papain-like amidase enzyme, YaeF/YiiX, PDB:3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.
Jiyao W et al.(2023). "The conserved domain database in 2023.",