8K31


Conserved Protein Domain Family
VQ

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pfam05678: VQ (This model is not part of the current CDD release)
VQ motif
This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Statistics
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PSSM-Id: 516920
Aligned: 89 rows
Threshold Bit Score: 35.0556
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8K31_A        36 ISNPMRVQTCASKFRELVQELTGQDAVD 63  thale cress
XP_044320830  28 dANTTFVQADPATFRALVQRLTGAPGGA 55 
XP_002300429  13 IINTQYVETDVRSFKSVVQEFTGKDSAP 40 
XP_002316791  13 IINTEYVQTDASSFKSVVQKLTGKDSAP 40 
CAG1846390    14 vIVTKCVQADAAQFKSVVQCLTGKDSVV 41 
XP_002437076  21 FIETQFISSDAASFKAVVQRLTGKSPAP 48 
Q5Z6B2        25 FIETQFVSSDAASFKAVVQRLTGQSAPS 52  Japanese rice
XP_009149157  13 FINTQYVQTDARSFKTVVQELTGKNAIV 40 
XP_006348408  10 IINTQYIETDASSFKSVVQKLTGKNSTV 37 
1_pfamImport   1 IINTEYIQTDVSSFKSVVQKFTGKNSTS 28 
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