6F44


Conserved Protein Domain Family
RNA_pol_Rpc82

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pfam05645: RNA_pol_Rpc82 
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RNA polymerase III subunit RPC82
This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the enzyme is composed of 15 subunits, ranging from 160 to about 10 kDa.
Statistics
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PSSM-Id: 398977
Aligned: 29 rows
Threshold Bit Score: 74.4272
Threshold Setting Gi: 74621431
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6F44_O 189 SLFVQLCEMGYLIQISKlhytPIEDLWQFLYEKHYKNIPrNSPLSDLKKRSQAKMNAKTDFAKIINKPNELS-------- 260 Saccharomyces cerevis...
Q5QM90   1 MNFNKLVFAHYVERCPK----PEPFFDPLVDEQSTSSRKrAPKTVEIALSIDKKVVNTAALSDAERFSEIPYime--das 74  Japanese rice
Q8LE81 148 DSLQKLVAARFVERIPS----PEPVLGNKEKEPAKRRGAkAAKILKEPETLEEQVVEAATPVDAIRFPLIFEed----sn 219 thale cress
Q6DJJ8 146 ATFTHLADTHFVQRCPG--------------LQEKDATE-GRPPLAPTLQMDEK--------EMYIIPKVNLtgrgkrrr 202 African clawed frog
Q53F76 146 NTFVRLADTHFVQRCPS--------------VPTTENSDpGPPPPAPTLVINEK--------DMYLVPKLSLigkgkrrr 203 human
Q7ZUX1 149 SAFSRLVETHFLQRCPP--------------MASAESSGtGSAETPPAVTQPSN---PESHPDCYKLPYISLsghgkrrr 211 zebrafish
Q4RBZ5 147 SAFCKLVETHFLQRCPP--------------VAGAAKTD-GAAPAAPAAQASASVPTPESFADCYKVPQVTLrgrgkrrl 211 spotted green pufferfish
Q9VG60 143 NTFLEMITDHYIIKRPE--------------------------LLVGDDQDENVPKFETNECDFFRHPNIDLqllakiqk 196 fruit fly
Q7QC11 143 DKFADLAQENYITRAPE---------------------------PKPSDGGADLMELCHDIPNPFLMPELDLrvlkelhe 195 Anopheles gambiae str...
Q8IG67 142 KSFEELAAAHFLIRVPS-----------------------------VESEIHGCPQFVTNFDPFAISTNIMEkk----eg 188 Caenorhabditis elegans
6F44_O 261 Q--ILTVDPKTSLRI---------------VKPTVSLTINLDRFMKGRRSKQLINLA----------------------- 300 Saccharomyces cerevis...
Q5QM90  75 NanDSPRSSISGAKRkhnalegdaeldstiAENEVLWRANFEKFTFCLKKKFCADRK----------------------- 131 Japanese rice
Q8LE81 220 SslADDNSNITEGKRkqrdv------dtsdSSSGVIWRPNFEEFIHRLRHKACVEIV----------------------- 270 thale cress
Q6DJJ8 203 SsdDDD-GGSQAKRQkkdt--------evsQDDGIYWQVNTERFHQHFRDQAIISAV----------------------- 250 African clawed frog
Q53F76 204 SsdEDAAGEPKAKRPkyttd-----nkepiPDDGIYWQANLDRFHQHFRDQAIVSAV----------------------- 255 human
Q7ZUX1 212 SseDGEADQRAAKKAktds--------secGDEGIHWQVNFERFHLHFRDQAIISAV----------------------- 260 zebrafish
Q4RBZ5 212 SgeDGE-DQRNAKKAkmdsevdfcfivtthGDEGIYWQVNFERFHLHFRDQAIISAV----------------------- 267 spotted green pufferfish
Q9VG60 197 GeaTLae----------------------aRDSHMVWHLNHDRFHQDFRDTIMVDAI----------------------- 231 fruit fly
Q7QC11 196 Gkpv------------------------kvPDEDVHWVVNVEQFHIDFRNTIMVTAI----------------------- 228 Anopheles gambiae str...
Q8IG67 189 TstSDSTSNNRKRKAdst---------pedGDAGQYWRINWIRFNGYLRDELIIDYLigggskgtmtnlnvkkeetiedp 259 Caenorhabditis elegans
6F44_O 301 -KTRVGSVTAQVYKIALRLTEQKSPKIRDPltqtgllqdleeaksfqdeaelveektPGLTFNAIDLARHL-PAELDLRG 378 Saccharomyces cerevis...
Q5QM90 132 -KPKLKVGTHPIWEAFFEASLMERDN-------------------------------NSVTSPINGIMERLgQKEGGTSM 179 Japanese rice
Q8LE81 271 -KERRDEGCAIVLRAMLEVGRSQEKKVKTD---------------------------NSAPMSVGSIYEEViKTEAGRTM 322 thale cress
Q6DJJ8 251 -SNKMDQTSSEIVRTMLRMSEVTTSSSAAY----------------------------TQPLSSNEIFRSL-PTGYNVSK 300 African clawed frog
Q53F76 256 -ANRMDQTSSEIVRTMLRMSEITTSSSAPF----------------------------TQPLSSNEIFRSL-PVGYNISK 305 human
Q7ZUX1 261 -SCKLDQTSGEIVRTMLRMSEVTTSANAAF----------------------------TQALSANEIFRAL-PSNYNIAR 310 zebrafish
Q4RBZ5 268 -ANKLDQTSSEIVRTMLRMSEVTTPPTASC----------------------------TKPLSANEIFRSL-PGSYNIAR 317 spotted green pufferfish
Q9VG60 232 -ERKLGENAAECFKFILKIMYNTTDPWERK---------------------------LSNQITFVEIKQAIeRKSNNLDL 283 fruit fly
Q7QC11 229 -ERLIDSNAGECMKYLLQLMRERTNPWEAV----------------------------SNPIALVDLRQRCeRKSQNVEM 279 Anopheles gambiae str...
Q8IG67 260 qGDRTQYITQNVAHLMFKINETRAKPMSME----------------------------SITASLTDLQRLVkENGLNLAK 311 Caenorhabditis elegans
6F44_O 379 SllsrkpsdnkkrsgsnaaaslpskklktedgfvipalpaavskslqesgdtqeedeeeedldadtedphsASLINSHLK 458 Saccharomyces cerevis...
Q5QM90 180 T----------------------------------------------------------------------LDHITRVLE 189 Japanese rice
Q8LE81 323 L----------------------------------------------------------------------QERVEACLD 332 thale cress
Q6DJJ8 301 Q------------------------------------------------------------------------VLDQYLT 308 African clawed frog
Q53F76 306 Q------------------------------------------------------------------------VLDQYLT 313 human
Q7ZUX1 311 P------------------------------------------------------------------------ILDQYLT 318 zebrafish
Q4RBZ5 318 P------------------------------------------------------------------------VLDQYLT 325 spotted green pufferfish
Q9VG60 284 M-----------------------------------------------------------------------KYLDQYIS 292 fruit fly
Q7QC11 280 L-----------------------------------------------------------------------RYLDQYIS 288 Anopheles gambiae str...
Q8IG67 312 P------------------------------------------------------------------------DIELACQ 319 Caenorhabditis elegans
6F44_O 459 ILASSNFPFLNETKP---GVYYVPYSKLMPVL 487 Saccharomyces cerevisiae S288C
Q5QM90 190 ELNCSP-------SSedpDSFILDLSRIVEAS 214 Japanese rice
Q8LE81 333 QLSATS-SYLPAFVNevnDSYIVDYKSIISVA 363 thale cress
Q6DJJ8 309 LLADDPLEYVGRSGDsggGMFVINLHKAVASL 340 African clawed frog
Q53F76 314 LLADDPLEFVGKSGDsggGMYVINLHKALASL 345 human
Q7ZUX1 319 LLVDDPMEFVGKAGDsggGMFVVNLHRALANL 350 zebrafish
Q4RBZ5 326 LLVDDPMEFVGRAGEsggGMYVVNLHKVLANL 357 spotted green pufferfish
Q9VG60 293 LLTEDSLGFFRRVGDmggGVYVVDMEHAFESL 324 fruit fly
Q7QC11 289 VMESND--YLSKFDTkggGQFTVNVKRIFEQL 318 Anopheles gambiae str. PEST
Q8IG67 320 ILVDESDGIIRKLGEsngGIFIVDIRRAIRQI 351 Caenorhabditis elegans
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