3WX6,1Y12


Conserved Protein Domain Family
T6SS_HCP

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pfam05638: T6SS_HCP 
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Type VI secretion system effector, Hcp
HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube.
Statistics
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PSSM-Id: 428557
Aligned: 152 rows
Threshold Bit Score: 74.0992
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3WX6_A           6 YLKVKGktqgeIKGSVVQEGHDGKIHILAFKNDYDXpaRLQEGLTPAAa--------ARGTITLTKEXDRSSPQFLQALG 77  Burkholderia ...
WP_012591361     6 FLKLEG-----IEGESEDSKHKNEMQVETVSWGVSN--ATSFSQGGGGgvg----kaHLQDIHLTKKVDKGSPKLFLACA 74  Methylocella ...
Q02CH0           7 FLKIDG-----IDGESLQKGHEKEIEIMSFSWGESN--AGSFAGNLGGgsg----kvSMQDFHFTVPVNKSSPKLFLACA 75  Candidatus So...
WP_015245969     6 FLKITD-----VKGESKDKSHSGEIEIESFSWGASQ--LGASSHGTGAgag----kvSMNDFHFVMRNNSASPTLFLFCA 74  Singulisphaer...
WP_002210479     8 FLHIEG-----VDGESPDQQYNGWIQVQAWQWAEEN--AGRWGLGGGGgsg----kvEMKDFEFRMVSNKASPKLFLMCA 76  Yersinia pseu...
Q63MY0           9 FLQIDG-----VEGESTDQQYPGLIQIQSWQWAEEN--SGRWGFGSGGgag----kvEMKDFEFRMVSNKASPKLFLMCA 77  Burkholderia ...
jgi:AciX9_1277   6 YLELNG-----ITGESEVAAFKGQIQVQSYSFGGTN--VSSVGTNGGSgag----kvNLGPLTITKHADSASGPLFLDMC 74 
jgi:AciX8_2875  10 YLNIPG-----CQGESQTSGATNQIKVNSFSFGGNS--VSSVDATSGSssg----kvICGDLNLDLVMDKGGPLLFQGMT 78 
WP_013567648    10 FLKLDG-----ATGEAIEPTHKNEIPVLSFSF------SGHAESGSGGtagssgagaMLHGINVTAIMDKGLQTVGKLFC 78  Terriglobus s...
WP_013578711     6 FLELDE-----INGESKDAKHTDQITIQSFSWGARQ--HTSVSGTGGSgag----raTLADLMVTKEYDASSGPIYKALL 74  Granulicella ...
3WX6_A          78 KREXXEEFEITIHRPktdtTGGDLTelLFTYKFEKVLITHXDQYsptphkddsng-ikegllgyieEIKFTYSGYSLEH 155 Burkholderia p...
WP_012591361    75 SGEHIKTATLTFRKS----GKDQQE--YLKITLTDVMVSSISFQdhaagg-----------dlaheSISLAYAKIETEY 136 Methylocella s...
Q02CH0          76 TGEHIKSAVLVCRKA----GKTQQE--FLKWKFTDLLISSYNTGgsggsd-----------vvpidQVSFNFTKIEVSY 137 Candidatus Sol...
WP_015245969    75 NGKHLKEAKLTCRKA----GGTQQN--FMVVTLSDVLISSYQTGgsqag------------evpmdQISLNYSKVEIDY 135 Singulisphaera...
WP_002210479    77 IGEHIPQAKLVCRKS----GQGQQD--FLIVTFSNCLVSSFKTVgnmplgkgda--vftdtvlptdAISLNFARIEVEY 147 Yersinia pseud...
Q63MY0          78 TGEHIQNAKLICRKS----GKGQQE--FLTISFASGLVSSFRTLgnmpisqlghasgevdgvlptdQIRINFAQIEFEY 150 Burkholderia p...
jgi:AciX9_1277  75 KGTHIPKGMLSLVKS----GGGSTA--YITLEMTEVFVAGFTSSatge--------------vpveTVHLTYKSILYTY 133
jgi:AciX8_2875  79 KGTHFATATLTGLKTa---GSSPGT--YFTLALTEAYVSSTQFSgqss--------------mpnlGISLSYNQITITY 138
WP_013567648    79 EGKHIATGVLSAMKAt---GTANKD--YFTLKMTQVYIQSFNVNlsnd--------------saivNLTLTYAEITPNY 138 Terriglobus sa...
WP_013578711    75 LGTHIKTGVLSAVKS----GGDGSA--FLTISLGELFITSIQIGasne--------------tpteSVTFSYNHIETAY 133 Granulicella t...
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