2GSC,2RLD


Conserved Protein Domain Family
23S_rRNA_IVP

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pfam05635: 23S_rRNA_IVP (This model is not part of the current CDD release)
23S rRNA-intervening sequence protein
This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.
Statistics
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PSSM-Id: 516900
Aligned: 295 rows
Threshold Bit Score: 43.5903
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2GSC_A         12 ERLDAWRDSMELVEMIYR-LTeVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIA 90  Xanthomonas ca...
WP_015146096    5 LELEIYQLAERLANAVCNaVS-SWENFHKYSLGQQMVRSADSIGANIAEGYGRHSLADQARFVVIARGSLYETMHWYRLG 83  Pseudanabaena ...
20_pfamImport   1 DELRVYGMAEELADMVWDvVI-PWEAFARSTVGNQLVRAADSVGANIAEGYGRASPVDNQRFVRTARGSLYEVRYFLRRA 79 
Q3A3M3          7 EELRVYQLSEKLADDIWKiVS-EWDYMAKDTVGKQLVRAVDSVGANIAEGTGRGSYQDNRRFVRIARGSLYEVRHWLRRA 85  Pelobacter car...
WP_015127522    7 QDLQVYQLSERLADDIWKmVD-GWNFFAKDTIGKQIVRSADSIGANIAEGLGRGSYQENKRFVKIARGSLNETQHWLRRA 85  Calothrix sp. ...
WP_006197923    7 QELRVYQLSEKLADDIWKiVN-NWQPLAQGTLGKQIIRSADSIGANIAEGVGRGSYQDNRRFVKIARGSLYETQHWLRRA 85  Nodularia spum...
WP_015224579    5 EDLQIYQIAEKLANKIWLiVS-KWDYFAKDTIGKQLVRSVDSIGANIAEGNGRYNHKDKERFIKIARGSLYETRHWLRLA 83  Halothece sp. ...
WP_371261548   16 ENLQVYQLAEKLANKIWNiVQ-EWKQFEKDTVGKQIVRSADSVCANIAEGRGCFNDQDNRRFIRISRGSLYETICFLRLA 94  Rivularia sp. ...
WP_015182794    7 EHLQIYKLAESLADEIWDiAG-NWEQFAKDTIGKQIVLSVDSIGANIAEGTERHNFADHQRYIRQALSSLNETRYWLRRA 85  Allocoleopsis ...
WP_015142687    7 EKLQIYQLAEQLADEIWFiVK-NWDEFERNTIGRQIVRSADSIGANIAEGNGRHNFRDNKRFIKIARGSLNETRHWLRRA 85  Pleurocapsa sp...
2GSC_A         91 ARLGYSRSEDDQSVRRQVDLVFAKLTA 117 Xanthomonas campestris pv. campestris
WP_015146096   84 CDRQLWEGEEQRALQEMLDELAPRLNA 110 Pseudanabaena sp. PCC 7367
20_pfamImport  80 DKRRLLTRDQKRSLHKLMDELPPALNA 106
Q3A3M3         86 YNRGLLTEDHILSTKLLLQELAPKLNA 112 Pelobacter carbinolicus DSM 2380
WP_015127522   86 YTRNLLTNEQIDATKTIIDELAPKLNS 112 Calothrix sp. PCC 7507
WP_006197923   86 YHRKLLTNEQIDALKLTINELAPQLNA 112 Nodularia spumigena
WP_015224579   84 FARNLLAREDIDKIKPLVEELSPKLNA 110 Halothece sp. PCC 7418
WP_371261548   95 YTRKMLTKEQSLKLKPIIDELSPKLNA 121 Rivularia sp. PCC 7116
WP_015182794   86 YTRHLLTREQIKKLKPIVDELSLKLNT 112 Allocoleopsis franciscana
WP_015142687   86 YVRKLLTSDRVNQLKPIVNDLSIKLNA 112 Pleurocapsa sp. PCC 7327
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