Conserved Protein Domain Family
Acc5b_avian_CoV

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pfam05528: Acc5b_avian_CoV 
Accessory protein 5b, avian coronavirus
Avian infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. This entry represents the host translation inhibitor 5b (ORF 5b, also known as accessory protein 5b) which is involved in host translation shut off without degrading host RNA. It suppresses host gene expression which facilitates evasion from host type I interferon immune response.
Statistics
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PSSM-Id: 283238
Aligned: 2 rows
Threshold Bit Score: 173.791
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q89786  1 MNNSKDNPFRGAIARKARIYLREGLDCVYFLNKAGQAEPCPACTSLVFQGKTCEEHIHNNNLLSWQAVKQLEKQTPQRQS 80  Avian infectious bronc...
Q89786  1 MNNSKDNPFRGAIARKARIYLREGLDCVYFLNKAGQAEPCPACTSLVFQGKTCEEHIHNNNLLSWQAVKQLEKQTPQRQS 80  Avian infectious bronc...
Q89786 81 LN 82  Avian infectious bronchitis virus (strain Beaudette)
Q89786 81 LN 82  Avian infectious bronchitis virus (strain Beaudette)
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