5V1U,3G2B


Conserved Protein Domain Family
PqqD

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pfam05402: PqqD (This model is not part of the current CDD release)
Coenzyme PQQ synthesis protein D (PqqD)
This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.
Statistics
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PSSM-Id: 516799
Aligned: 346 rows
Threshold Bit Score: 33.9961
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5V1U_A         20 VLLHLQT-----------------------GTYfGLDAVGSRIWSLL-EE-GKr--PEEIVDAICAEY-SVDrp-tVERD 70  Thermobaculum ...
WP_014243584   25 MLLNSEG------------------------KAySTNSAILLIWELC-SGeSS---VTQLCNELRANSkNNsv--dLTEK 74  Halobacteriovo...
BAJ47015       22 LLVNENG-----------------------DAY-KVNEAVVAVWNMFeDKt-----VSDVVGEVAEQV-NRDpa-eLKEA 70 
WP_015020001  135 iLANDKD-----------------------QGF-MVNEAIVEFWNTC-DGtKT---INQLTDQFSAKL-GMPrq-qVEQE 184 Candidatus Nit...
WP_012214555  134 VLANEHD-----------------------QGF-MVNQAIVDFWKSC-NGqRK---VTDLVEIFAQQT-GLQrn-qVEKE 183 Nitrosopumilus...
jgi:Igag_1105  32 AVDEERAy--------------------------ALAPAVYYVWSMC-DGeTS---IGKIVENIAQNIeeeidintLYNA 81 
WP_015019550   27 plLINDR-----------------------GEAyRVNDTAVSLWNMC-NGiTF---DDLFLEVLRI---SSDseseVKKS 76  Candidatus Nit...
WP_014437086   72 pVPQTRTv--------------------------DLDPLGREVYELL----GRgrrVEEVIEAFAEAH-KLPfa-eAQES 119 Phycisphaera m...
Q314S7         40 VRLHYAAapgrlaal--------vrgaapvPRTlELDELGTAVWMLI-DGrRP---VSGIAQALAQRY-KLHqs-eAELS 105 Desulfovibrio ...
WP_015851632   40 VMLSYPLrlkplfadvakrfgmwkdghapiKKL-ELDEMGTLVWDMI-DGrNS---VRKIAAAFAQKYqVLPr--eAEVA 112 Maridesulfovib...
5V1U_A         71 LRDFLRALANKELL 84  Thermobaculum terrenum ATCC BAA-798
WP_014243584   75 VSEIIEKLNKAKLV 88  Halobacteriovorax marinus
BAJ47015       71 IEQLAAKLVEAGLI 84 
WP_015020001  185 VVQLVQQLLEAELL 198 Candidatus Nitrososphaera gargensis
WP_012214555  184 VMQLLQQLRDGGLI 197 Nitrosopumilus maritimus
jgi:Igag_1105  82 VVDIIDKLVEVSLL 95 
WP_015019550   77 LEQMIKQFQKISVI 90  Candidatus Nitrososphaera gargensis
WP_014437086  120 VSAFLRLLLARDLV 133 Phycisphaera mikurensis
Q314S7        106 VSAFLRQLGRRGLI 119 Desulfovibrio alaskensis G20
WP_015851632  113 TASFLRDLGKRGLV 126 Maridesulfovibrio salexigens
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