5MRC


Conserved Protein Domain Family
VAR1

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pfam05316: VAR1 (This model is not part of the current CDD release)
Mitochondrial ribosomal protein (VAR1)
This family consists of the yeast mitochondrial ribosomal proteins VAR1. Mitochondria possess their own ribosomes responsible for the synthesis of a small number of proteins encoded by the mitochondrial genome. In yeast the two ribosomal RNAs and a single ribosomal protein, VAR1, are products of mitochondrial genes, and the remaining approximately 80 ribosomal proteins are encoded in the nucleus. VAR1 along with 15S rRNA are necessary for the formation of mature 37S subunits.
Statistics
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PSSM-Id: 516754
Aligned: 14 rows
Threshold Bit Score: 62.0357
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MRC_CC      135 IIMSKTINQHSLNKLNIKFYYYNNDINNNNNNNN---------NNYYMnMMNKLM------------NIMNNNMnnnlcn 193 brewer's yeast
EKC97177      41 ALSSKPTFIVSRDKVIVNVFYYIPKSEAELEEDKgykkvrygrKKIQS-LNQNTL------------NNLGRTL------ 101
Q0H8Z0        83 FFISKPNFSHTNSKVTIQLFYYTAspknh----------lvntSNNDLtTVSSHF------------SDLSTTL------ 134 corn smut
2_pfamImport   1 VLISSPIYNQSNNKVNITLFYYHK-------------------NNQMEiLSQEKL------------QELCKTL------ 43 
CDH52946      19 QLTSTPQFRHSPSRVTIQMFYYADPNFGD--------------------LSQFKL------------QPLEQLV------ 60 
RCI05854      50 HLTSTPAFRHSPSKVTIQLYYYADPAFTN--------------------LADFKM------------EPLEKLI------ 91 
Q75G41        94 ILMTNLKFEHRTNSIHIKYYFYNYMNINNDELSKl--------YNNYMmSINNQMinll----nndnNSLNNLM------ 155 Eremothecium go...
Q8M355       106 IIMMKPMYQYMMNKLNIKFYYY----INNNNMNT-----------NYYmNMLYKLmntlnnnnnmymNNMNNIM------ 164 Naumovozyma cas...
RIB24847      46 KSLSDITIKHTPKKVVFQQYYYANTIPTQRRGLEeidngsakeETNKDiFNPIAL------------DKLKERL------ 107
XP_025182859  45 LPLNDFQIKHSSNKVVIQQYVYKP-MLNSRTNTSslkgsvatqEDLNGhLSPISL------------KKLSELY------ 105
5MRC_CC      194 ilSYYY-KKKVTIEPIKLSYIYLNSDIFSKYISlNDMDKYNNGIltnyQ----RMLNNIMPKLNDHNISMNYinninnin 268 brewer's yeast
EKC97177     102 --RKLF-DRKVELQFVKLNYPYLNRTILAKYIGiNRNNYKFNKV----V----GSIFRNRPVVKNNFENFSN-------- 162
Q0H8Z0       135 --AQLY-QKEVHVIATRLYYPYLNSDILSQYLAhNGPSNTFMDF----Q----EAILTNPSL------------------ 185 corn smut
2_pfamImport  44 --S-LIfHKEVHIEMIRVHYPYMNSQILAQYLVnNASKKNFLKF----S----DAILTYPSLKAGVYGKAGE-------- 104
CDH52946      61 --SNLYpNKYVDMRVIRLHYPYMNAEILAKYLTvNSQKKSWSAL----T----RPFMKNMPIVKAPLAHNMP-------- 122
RCI05854      92 --SSLYpGKYVDLRLIRVHYPYMNAEILAQYLTiNSERIGWSQL----T----RRFMKGVPLVKPPLPHNMP-------- 153
Q75G41       156 --TKYY-NKKVYINTYKLNYMYLDTELLSQTLT---NIYNNNGL----SlkslKMIINKLPFNNDMLLSKNY-------- 217 Eremothecium go...
Q8M355       165 --SMYI-NKNINIEMIKLNYVYNNKDIMNKYLStMDIDTLNNNS----Tm---NLLNNMMTKMNNNNIIMNY-------- 226 Naumovozyma cas...
RIB24847     108 --SKLY-NKDVEFNLIKQHYPYLNSKILAQYIAlNASRYRFRQI----R----RSLFKKIPLVGG-NQQQND-------- 167
XP_025182859 106 --STLY-KKPVEFKIILLKYPFLSSKILAQYLAmQTKKHNIRQI----R----RNLFKKVPLASLINYERGN-------- 166
5MRC_CC      269 nnkynnminllnnnnninnnnnynnnnnnyigninniynnmtIDni---------------------------------p 315 brewer's yeast
EKC97177     163 ------------------------------------------KY------------------------------------ 164
Q0H8Z0           --------------------------------------------------------------------------------     corn smut
2_pfamImport 105 ------------------------------------------E------------------------------------- 105
CDH52946     123 ------------------------------------------FAvqwqn--------------------------llpqv 134
RCI05854     154 ------------------------------------------FGvqwns--------------------------llpqt 165
Q75G41       218 ------------------------------------------VNkmnkynltinnnlnnnkkdlinlytldnklldlsit 255 Eremothecium go...
Q8M355       227 ------------------------------------------MNnmnnmrnnky-----------------innmssnyi 247 Naumovozyma cas...
RIB24847     168 ------------------------------------------LNatsalkw-----------------------iqlsrl 182
XP_025182859 167 ------------------------------------------LVgg---------------------------------i 171
5MRC_CC      316 MDILMYKYLVGWSIKFKGRLS--NNNGRTSTTNLLNGTFNNKkylwsninnnyklnyipsNHNLYNNSNINKNGKYNIKV 393 brewer's yeast
EKC97177     165 TRLDLPSHMLGMKIRASGRLNseRAKPRLTVIERKLGNFNDKng---------------tYTELGSWTIKSRHGAVTVKV 229
Q0H8Z0       186 HKTNLPAHISGIKVQVSGRLVteTVIPRITVKSYLIGSFQRNsnntank-----lgdfvtSIDYSKFTTKNELGAFTVKV 260 corn smut
2_pfamImport 106 DSFILPSYIQNIRLELSGRLVteKVVPRVTKKIAQIANPNADsgvylleaglsndtvenvVVDYGKVTSKNELGSFTLKV 185
CDH52946     135 ANDKLTTAIQGVKYQVSGRLGrrSGSGRSQILRKSIGTFQFTsh--------------rsLVDVGRHTFSNKNGSITVKV 200
RCI05854     166 ANGQLTSAIQGIKYQVSGRLGrrKGASRTQVMRKSLGTFQFTsh--------------ksLVDVGRHTFANKNGSITVKV 231
Q75G41       256 NNMLLGKYLVGSNIQLKGRTl-nRNITRTMKMNIMKGTFNNYmyqwsklnnlyklnymstNINKTNNTFINKNGMFNIKI 334 Eremothecium go...
Q8M355       248 MNMLMYKYLTGWTILLKGRLn--KNMTRTNKYILYNGSNKMNmymknny----klnyisnNHFINNINNVNKNGKYNIKV 321 Naumovozyma cas...
RIB24847     183 GQQILPTHLSGVKIQISGRMSlrKGSARTSVINKSIGSFRFHsle-------------ntMIDYAKVERKNQNGAYCVKV 249
XP_025182859 172 KNYYLPTHLAGIKLKISGRMSlrKGAARSAVVTKSIGRLRTNtvd-------------ksMIDYAKTEGKNMNGAYCIKV 238
5MRC_CC      394 KLNFI 398 brewer's yeast
EKC97177     230 WITHK 234
Q0H8Z0       261 WICQR 265 corn smut
2_pfamImport 186 WITSV 190
CDH52946     201 WIASA 205
RCI05854     232 WIASA 236
Q75G41       335 KLNTI 339 Eremothecium gossypii ATCC 10895
Q8M355       322 KLSYI 326 Naumovozyma castellii
RIB24847     250 WLSSS 254
XP_025182859 239 WLSSA 243
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