5CQH,5SWW,4ROV,2NYT


Conserved Protein Domain Family
APOBEC_C

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pfam05240: APOBEC_C 
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APOBEC-like C-terminal domain
This domain is found at the C-termini of the Apolipoprotein B mRNA editing enzyme.
Statistics
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PSSM-Id: 398766
Aligned: 78 rows
Threshold Bit Score: 93.3068
Threshold Setting Gi: 1703049
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5CQH_A       108 THVRLRIKAARIYDy-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYR----QGCPFQPWDGLEEHSQALSGRLRA 182 human
XP_005995520 146 KNLRLSILAARLFMweEPEIQDGLRQLKAAGCKLKMMAPQDFVHTWKTFVEQ----EGEDFVPWEEIQENTTYYEEKLAE 221 coelacanth
2NYT_D       109 KNLRLLILVGRLFMweEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQee-gESKAFQPWEDIQENFLYYEEKLAD 187 human
XP_007249974 203 KTLRLNIHCSRLFLweEPEVQAALKALVQAGCKLRMMRPVDFTYVWSTFVEN----EEESFAPWEDCQDSYEYYDEKLAN 278 Mexican tetra
CAG07372     209 KKVRLCIFCSRLFEweQPDEVEALRTLARAGCKLRMMKPSDFQHVWETYVEK----EGESFTTWEDCQDNYNYYKEILAD 284 spotted green p...
XP_013128596 190 KKLRLCIFCSRLFEweEPEIVEGLKGLVRAGCKLRMMKPSDFLHVWETYVEK----EDQSFTPWEDCQENYNYYVEKLAD 265 Nile tilapia
XP_011611927 169 RNIKLSIFAARLFEweEAEIQAGLKALHIAGCKIRVMKPLDFSYTWDTFVEN----EDQPLNLWADCKENYEYYHERLAD 244 torafugu
NP_001013332 171 KNIRLAIFSSRLFEweEPEIQAGLKLLASVGCKLRMMKPLDFTYTWDTFVES----DEQQFTPWEDCQENYEYYQDKLAD 246 zebrafish
XP_015197979 199 KTLRLTLMAARLFQweEPEVQEGLRLLQAAGCKVRIMKPTDFSYVWDTFVDT----EEQAFVPWEDMQENCEYYQERLAE 274 spotted gar
XP_005059545 139 kglrltimVGRLFMweEPEMQAALRGMKEAGCKLRIMKPQDFEYVWKNFVEPeegeEAKSFVPWEDIQENFQYYEEKLAE 218 collared flycat...
5CQH_A       183 IL 184 human
XP_005995520 222 IL 223 coelacanth
2NYT_D       188 IL 189 human
XP_007249974 279 IL 280 Mexican tetra
CAG07372     285 IL 286 spotted green pufferfish
XP_013128596 266 IL 267 Nile tilapia
XP_011611927 245 IL 246 torafugu
NP_001013332 247 IL 248 zebrafish
XP_015197979 275 IL 276 spotted gar
XP_005059545 219 IL 220 collared flycatcher
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