6MZM


Conserved Protein Domain Family
TAF4

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pfam05236: TAF4 (This model is not part of the current CDD release)
Transcription initiation factor TFIID component TAF4 family
This region of similarity is found in Transcription initiation factor TFIID component TAF4.
Statistics
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PSSM-Id: 516720
Aligned: 62 rows
Threshold Bit Score: 140.083
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6MZM_D        774 INDVASMAGVNLSEESARIL--------------------------AT--NSELVGTLTRSCKDE----TFLLQAPLQRR 821  human
XP_006685707  150 LNDALAAAGVDIQREEELLMqq----------------------qlSR--VPQQPQFNQQRVAVS----QFLNPYHVNTY 201 
XP_001385652   20 LNDAIAAAGVDIQREEELLTiqq--------------------trtTD--VSRDLRQFLRSSKPP----AFLNPYHVASF 73  
XP_036667993   98 LNDAIAAAGVNIHEEEELLLqqqs-------------------lrkNE--ATNEKNVLSRAPKVS----PFLNPYHLAAF 152 
A5DYN3        264 LNDAIAAAGVDIQKEEELLQqrql-------------------nrkPG--APSEKQDGSKSQTQV----PLLNPYHLSAF 318  Lodderomyces ...
Q59U67         87 LNDAIAAAGVDIQQEEEILLqqql-------------------nrkSAegMASNLKSVIRSSKSP----PFLHNYHLAAF 143  Candida albic...
XP_002547378  145 LNDAIAAAGVDIQQEEEILLqqql-------------------nrkSTdgMTSNLKNVIKSSKPP----SFLNNYHLAAF 201 
Q6BKB1        241 LNDALAAAGVDIQHEEELLMqqhl-------------------nrsSR--FPSAQQPPRQRFAQT----SLFSPYHVAAF 295  Debaryomyces ...
CCE81230      203 LNDALVAAGVDLQQEEELLMqqqm-------------------nrsNR--YNLSQTGLYRQPQREdvgsLLLNPYHLAVY 261 
EPS43242       73 LSDVLFSTGVDLQAEEQYLYndttpaasfnasasisalqggiaaeqRQ--INREEAENSGKLRHAn--dPFLSNSNLQAK 148 
6MZM_D        822 ILEIGKKHGIT---ELHPD-VVSYVSHATQQRLQNLVEKISETAQQKNF-SYKDDDRYE--------------------- 875  human
XP_006685707  202 MQKSARENGVLqnfLQDPE-VLEIMSASCERWISDIVAKTIVMARHRQN-SAPIGksk---------------------- 257 
XP_001385652   74 MNRVARENGVQqnfLQDGD-LLELMSASCEMWLSSILGKTVLLSRHRRR-GIPQPtnakngkk----------------- 134 
XP_036667993  153 LGKVAKTHQINqnfLEDGD-MLNLVSGACETWIAQIASKAITISRHRRRgGVLTTskkng-------------------- 211 
A5DYN3        319 LAKVSKTHQIHqnfLEDGN-LLNLISDACEDWLSHIASKALILSRHRRR-GTQFSlkkggls------------------ 378  Lodderomyces ...
Q59U67        144 IDKVAKQNGIQqnfLMDGE-MLELISAACETWLSNLATKTIILSRHRRR-GIPVINKKSgss------------------ 203  Candida albic...
XP_002547378  202 MDKVAKENGIQqnfLMDGE-MLELVSAACETWLSRLATKTMMLSRHRRR-GIPKIgkrsg-------------------- 259 
Q6BKB1        296 MQRVARENGVMqnfYQDAE-LLELMSTSCENWLSNIITKTIILSRHRRR-GIPTItntkqnkkta--------------- 358  Debaryomyces ...
CCE81230      262 MQRVSKENGIQqnfFQDPE-LLELMSSSCEDWLSHIITKTIILSRHRRR-GMfgnaakn--------------------- 318 
EPS43242      149 IHQKLVDQRLGs--SGNPDhFSELISIAIQERMRELVTTATVYARHRRQ-GNTLKGLGEwadiafgetegrngrlrseql 225 
6MZM_D        876 --------------------------------QASDVRAQLKFFEQLDQIEKQRKDE---------------QEREILMR 908  human
XP_006685707  258 -----------------------------ttsGKSDMYSELRGLAKKHRELEEQRVErr--------------iaLGLEK 294 
XP_001385652  135 ------------------------assnansaPRSELSKELRNLAVRQKELEERRISkr--------------imLGLEK 176 
XP_036667993  212 ---------------------------tisssQRSAVSRELRNIAVKQKELEEKRVSkr--------------iaLGLEK 250 
A5DYN3        379 -------------------------sltqlsqQRSAVSKELRNLALRQKEMEEKRVQkr--------------ivLGLEK 419  Lodderomyces ...
Q59U67        204 ------------------------------svPRSEISKELRSLALKQKEMEEKRVNkr------------vM--LGLEK 239  Candida albic...
XP_002547378  260 ----------------------------sssvPRSEISKELRNLAIKQKELEEKRVSkr--------------vmLGLEK 297 
Q6BKB1        359 ----------------------sssasmsnpaSRSELSKELRNLAAKQKEMEERRVSkr--------------maLGLEK 402  Debaryomyces ...
CCE81230      319 -------------------------kkppvntQRSELSRELRNIALKQKELEEKRVAkr--------------vaLGIEK 359 
EPS43242      226 egdtapspggvisrkrsfavanatsqtprqpsLVSETAKSLRQIATDERLIEEARIAarmaringtkpgtpaADGAGGDS 305 
6MZM_D        909 AAKSRSRQEDPEQLRLKQK--AKEmqQQELAQMRQRDANLTALAAIG-PRK-KRKv-------DCPGPGSGAEGSGPGSV 977  human
XP_006685707  295 SDD-----NGKYENKAGSEetL------------HRAANATAAMMTSnPGR-KKYswm---tsGAGGPNGGSAGVSEKDS 353 
XP_001385652  177 NGA-DPDGDQNGDSKAGAEetL------------HRAANATAAMMTMkTGV-KKYswm---tsTSSAGADTAKAGADTEK 239 
XP_036667993  251 SAN-DSNDGENGDSKAGADetL------------HRAANATAAMMTV--GK-KKYswm---nsSANGGGVGSDVDGKGGS 311 
A5DYN3        420 SSG--NGTDDAANGKPGSEetL------------HRAANATAAMMAT--GK-KKYswm---ssGGGGAGSIGSLGDDARG 479  Lodderomyces ...
Q59U67        240 STKDASKNDENGESKAGAEetL------------HRAANATAAMMTMnPGR-KKYswm---tsSATAGGGSDFGKSSGGS 303  Candida albic...
XP_002547378  298 SPNDPSNTGENGDSKAGAEetL------------HRAANATAAMMTMnLGK-KKYswmtssngSGGGGGGADSGKSGNGA 364 
Q6BKB1        403 DGT-DPGNGDPANGKAGAEetL------------HRAANATAAMMTMnPGR-KKYswm---taNAGSGGGDDSKVASEKD 465  Debaryomyces ...
CCE81230      360 DPS-DSSWNESGSGKADAEetL------------HRAANATAAMMAN-PGR-KKYswm---nsGSNASNTDESSADKSGa 421 
EPS43242      306 TNPLPGSVAPEPEKRMTAKeaKKAqnSRLDEIQSHKAANETASLMLG-GGRkKKYswm---saGGGAGGGGGSGASTPSR 381 
6MZM_D        978 VPGS--SGVGTPrqf----------------------trQRITRVNLRDLIFCLENERETShSLLLYKA 1022 human
XP_006685707  354 Nskrshllssr------------------gdngirlnntRITQAVTMKDLLAAIEDERMNVqNALVKGY 404 
XP_001385652  240 gkqsallsvr-------------------gdnglrfreiRSGNTITMKDILGAIEGERMGTqRAIIKGY 289 
XP_036667993  312 SSNKgkqspiisar---------------gdsglryrevRAGNSIVLKDLLGAIENEKRGTqEAVVKGY 365 
A5DYN3        480 SGVGigGGGVGggdsktkqsails---argdnglryrdlRSTNAIVLKDLLNALEGEKKGTqHAITKGY 545  Lodderomyces elongisporu...
Q59U67        304 SKDS--Gkhqspiisvr------------gdnglrfreiRSGNSIIMKDLLGAIEDEKMGTrNAVIKGY 358  Candida albicans SC5314
XP_002547378  365 SKDGrkespiisir---------------gdnglrfreiRSGNSVVMKDLLEAIEDEKRGTrNAIVKGY 418 
Q6BKB1        466 GKskqssiiaar-----------------gdnglrfreiRSGNSVTMKDLLGALEDERMGTeKAVLKGY 517  Debaryomyces hansenii CB...
CCE81230      422 rqstlisvr--------------------gdnglryreiRTGNTVTVKDLLSALEDERMGSeKALLKGY 470 
EPS43242      382 LPGTpgATTGTPgatvaaaisngpvmywgkrmgewneqgERGKGVQLRDWTLALEADGRER-KSLQKGY 449 
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