6MZM


Conserved Protein Domain Family
TAF4

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pfam05236: TAF4 
Transcription initiation factor TFIID component TAF4 family
This region of similarity is found in Transcription initiation factor TFIID component TAF4.
Statistics
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PSSM-Id: 398763
Aligned: 75 rows
Threshold Bit Score: 111.931
Threshold Setting Gi: 549044568
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6MZM_D        774 INDVASMAGVNLSEESARIL--------------------------AT--NSELVGTLTRSCKDE-----TFLLQAPLQR 820 
CCE44832       98 LNDAIAAAGVNIHEEEELLLqqqs-------------------lrkNE--ATNEKNVLSRAPKVS-----PFLNPYHLAA 151  Candida parap...
A5DYN3        264 LNDAIAAAGVDIQKEEELLQqrql-------------------nrkPG--APSEKQDGSKSQTQV-----PLLNPYHLSA 317  Lodderomyces ...
Q59U67         87 LNDAIAAAGVDIQQEEEILLqqql-------------------nrkSAegMASNLKSVIRSSKSP-----PFLHNYHLAA 142  Candida albic...
EER34823      145 LNDAIAAAGVDIQQEEEILLqqql-------------------nrkSTdgMTSNLKNVIKSSKPP-----SFLNNYHLAA 200  Candida tropi...
EEQ40494      268 LNDALAAAGVDIQREEELLSiqn---------------------nrTA--INLHQQQFANRQRQTfgpmgSFLHPYHVAL 324  Clavispora lu...
A5DAX7        190 LNDALAAAGVDIGREEELLQqqqy-------------------nraPR--INVQQPSYLQSRPARqiqrtPFLNSYHLGT 248  Meyerozyma gu...
EGV64901      150 LNDALAAAGVDIQREEELLMqq----------------------qlSR--VPQQPQFNQQRVAVS-----QFLNPYHVNT 200  Yamadazyma te...
XP_011108727   73 LSDVLFSTGVDLQAEEQYLYndttpaasfnasasisalqggiaaeqRQ--INREEAENSGKLRHAn---dPFLSNSNLQA 147  Dactylellina ...
EGX46640       79 LTDVLFSTGVDLQAEEQYLYndtpaasfaglh---sslsggvsaeeRA--LNRQEAEASGKLRHGq---dPFLHREKLLG 150  Arthrobotrys ...
6MZM_D        821 RILEIGKKHGIT---ELHPD---VVSYVSHATQQRLQNLVEKISETAQQKNFsykdd----------------------- 871 
CCE44832      152 FLGKVAKTHQINqnfLEDGD---MLNLVSGACETWIAQIASKAITISRHRRRggvlttsk-------------------- 208  Candida parap...
A5DYN3        318 FLAKVSKTHQIHqnfLEDGN---LLNLISDACEDWLSHIASKALILSRHRRRgtqfslkkgg------------------ 376  Lodderomyces ...
Q59U67        143 FIDKVAKQNGIQqnfLMDGE---MLELISAACETWLSNLATKTIILSRHRRRgipvink--------------------- 198  Candida albic...
EER34823      201 FMDKVAKENGIQqnfLMDGE---MLELVSAACETWLSRLATKTMMLSRHRRRgipkigk--------------------- 256  Candida tropi...
EEQ40494      325 FMNRTARENGVAqnfMVDPE---MLDFMSAACKEWLSSIVMKTIALARHRRRgipafnnkngn----------------- 384  Clavispora lu...
A5DAX7        249 FMQRVARENGVLqsfMSDNE---LLELMSASCEQWISHIATKTVLLSRHRRRgipalknk-------------------- 305  Meyerozyma gu...
EGV64901      201 YMQKSARENGVLqnfLQDPE---VLEIMSASCERWISDIVAKTIVMARHRQNsapigk---------------------- 255  Yamadazyma te...
XP_011108727  148 KIHQKLVDQRLGs--SGNPDh--FSELISIAIQERMRELVTTATVYARHRRQgntlkglgewadiafgetegrngrlrse 223  Dactylellina ...
EGX46640      151 QTHQKLVKERI----SSNADhtaLAELLSIAAQEHIRELLTTATQYAQYRRRgntvkgmgdwadiafgesegrdgrlkte 226  Arthrobotrys ...
6MZM_D        872 ------------------------------dryeQASDVRAQLKFFEQLDQIEKQRKDE---------------QEREIL 906 
CCE44832      209 --------------------------kngtisssQRSAVSRELRNIAVKQKELEEKRVSkr--------------iaLGL 248  Candida parap...
A5DYN3        377 -------------------------lssltqlsqQRSAVSKELRNLALRQKEMEEKRVQkr--------------ivLGL 417  Lodderomyces ...
Q59U67        199 ---------------------------ksgsssvPRSEISKELRSLALKQKEMEEKRVNkr------------vM--LGL 237  Candida albic...
EER34823      257 ---------------------------rsgsssvPRSEISKELRNLAIKQKELEEKRVSkr--------------vmLGL 295  Candida tropi...
EEQ40494      385 -----------------------sggkpksippsQRSEVSKELRNLALRQKEQEERRVAkr--------------laLGL 427  Clavispora lu...
A5DAX7        306 ---------------------------klaanqiPRSEVSKELRNLALKQKELEEQRVSrr--------------ilLGL 344  Meyerozyma gu...
EGV64901      256 -----------------------------skttsGKSDMYSELRGLAKKHRELEEQRVErr--------------iaLGL 292  Yamadazyma te...
XP_011108727  224 qlegdtapspggvisrkrsfavanatsqtprqpsLVSETAKSLRQIATDERLIEEARIAarmaringtkpgtpaADGAGG 303  Dactylellina ...
EGX46640      227 lsegenidspsgsvsrkrsfaqansssilprtpsLLSETAKSIRALAMDERMIEEARAAarltrlngtktgtpaADGGTG 306  Arthrobotrys ...
6MZM_D        907 MRAAKSRSRQEDPEQLRLKQK--AKEmqQQELAQMRQRDANLTALAAIG-PRK-KRKv-------DCPgPGSGAEGSGPG 975 
CCE44832      249 EKSAN-DSNDGENGDSKAGADetL------------HRAANATAAMMTV--GK-KKYswm---nsSANgGGVGSDVDGKG 309  Candida parap...
A5DYN3        418 EKSSG--NGTDDAANGKPGSEetL------------HRAANATAAMMAT--GK-KKYswm---ssGGGgAGSIGSLGDDA 477  Lodderomyces ...
Q59U67        238 EKSTKDASKNDENGESKAGAEetL------------HRAANATAAMMTMnPGR-KKYswm---tsSATaGGGSDFGKSSG 301  Candida albic...
EER34823      296 EKSPNDPSNTGENGDSKAGAEetL------------HRAANATAAMMTMnLGK-KKYswmtssngSGGgGGGADSGKSGN 362  Candida tropi...
EEQ40494      428 EKSDD----VAPETGNKVGAEetL------------HRAANATAAMMTMnPSR-KKYswm---tsGASdGGDAGKASPAK 487  Clavispora lu...
A5DAX7        345 ENKDA------NSESNKVGAEetL------------HRAANETAAMMTS--NK-KKYswm---ssGAGnGDDSKAMEREK 400  Meyerozyma gu...
EGV64901      293 EKSDD-----NGKYENKAGSEetL------------HRAANATAAMMTSnPGR-KKYswm---tsGAGgPNGGSAGVSEK 351  Yamadazyma te...
XP_011108727  304 DSTNPLPGSVAPEPEKRMTAKeaKKAqnSRLDEIQSHKAANETASLMLG-GGRkKKYswm---saGGGaGGGGGSGASTP 379  Dactylellina ...
EGX46640      307 ETTNPLPGSVAPEPEKRMTAKeaKKAqnSRLDEIQSHKAANETASLMLG-GGRkKKYswm---saGG--GGGGGSGASTP 380  Arthrobotrys ...
6MZM_D        976 SVVPG---SSgvgtp---------------------rqftrQRITRVNLRDLIFCLENERETSHSLLLYKA 1022
CCE44832      310 GSSSNkgkqspiisar---------------gdsglryrevRAGNSIVLKDLLGAIENEKRGTQEAVVKGY 365  Candida parapsilosis
A5DYN3        478 RGSGVgigGGgvgggdsktkqsai---lsargdnglryrdlRSTNAIVLKDLLNALEGEKKGTQHAITKGY 545  Lodderomyces elongispo...
Q59U67        302 GSSKDs--Gkhqspiisvr------------gdnglrfreiRSGNSIIMKDLLGAIEDEKMGTRNAVIKGY 358  Candida albicans SC5314
EER34823      363 GASKDgrkespiisir---------------gdnglrfreiRSGNSVVMKDLLEAIEDEKRGTRNAIVKGY 418  Candida tropicalis MYA...
EEQ40494      488 DSSskqsslistr------------------gdnglryreiRTGNMVTTKDLLGVLEDERMGTSKALIKAM 540  Clavispora lusitaniae ...
A5DAX7        401 dkqshllalr---------------------gdnglrfrdiRTGDSVTMKDLLAALEDERMGVNKAIMKGY 450  Meyerozyma guilliermon...
EGV64901      352 DSNskrshllssr------------------gdngirlnntRITQAVTMKDLLAAIEDERMNVQNALVKGY 404  Yamadazyma tenuis ATCC...
XP_011108727  380 SRLPGtpgATtgtpgatvaaaisngpvmywgkrmgewneqgERGKGVQLRDWTLALEADGRER-KSLQKGY 449  Dactylellina haptotyla...
EGX46640      381 NRLPGnsnAAggtpaataatvttnvptmywgkrmgewseqgDRGKGIQIRDWIQALEQDGRET-KTlqkay 450  Arthrobotrys oligospor...
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