1NG9,1EWR,5YK4,8R7E,8R7E


Conserved Protein Domain Family
MutS_III

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pfam05192: MutS_III (This model is not part of the current CDD release)
MutS domain III
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam01624 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in.
Statistics
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PSSM-Id: 516687
Aligned: 953 rows
Threshold Bit Score: 71.6593
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1NG9_A                      272 ATRRNLEITQN-LAGGaENTLASVLDCTV-TPMGSRMLKRWLHMPVRDTRVLLERQQTIGAl------------------ 331  Escherichia coli...
XP_003057616                588 NVMRQLELLRS-IDGAhRGSLLWLMGSNArTPCGSRLVRRWVSHPLTDKRDVERRLDAVDElrtka-------------- 652 
Q01B29                      443 NVLRQLEVLTS-SAGAyKGSLLWLMNHTA-TAMGGRLLRHWVSHPLHSKVAIERRLDAVEAlrdltsfe----------- 509  Ostreococcus tauri...
XP_019068350                435 NALQQLEVLMNnFDGSeSGSLFHCMNQTL-TLFGSRLLRHWVTHPLRDRNMIGARLDAVSEiaesmqthrtsht-svlem 512 
XP_002867605                423 NTLQQLEVVRNnSDGSeSGSLFHNMNHTL-TVYGSRLLRHWVTHPLCNRNLISARLDAVSEiaacmgshsssqnsdelve 501 
O65607                      425 NTLQQLEVVKNnSDGSeSGSLFHNMNHTL-TVYGSRLLRHWVTHPLCDRNLISARLDAVSEisacmgshsssqlsselve 503  thale cress...
XP_002510803                423 NTLQQLEVLRNnSNGSdSGSLFNIMNHTL-TISGSRLLRHWVTHPLCDRNMISARLDAVSEiaesmgsykalqntgdfde 501 
Vitvi:Vitvi030509.t01.CDS1  432 NALQQLEVLNNhSDGSeSGSLLHTMNHTL-TIFGSRLLRHWVSHPLCDSNMISARLDAVSEivmsmgsckasqnfggide 510 
KRG91489                    406 NALQQLEVLKNnSDGSeIGSLLQIMNRTL-TIFGSRLLRHWVSHPLCDQTLISARLHAVSEiaqsmgscnsvkn-lvrve 483 
NP_194284                   425 NTLQQLEVVKNnSDGSeSGSLFHNMNHTL-TVYGSRLLRHWVTHPLCDRNLISARLDAVSEisacmgshsssqlsselve 503  thale cress...
1NG9_A                      332 --------QDFTAGLQPVLRQ-VG---DLERILARLALRTARPRD-LARmRHAFQQlPELRAQLETVDSAPVQALrekmg 398  Escherichia coli...
XP_003057616                653 ---edgggHGGVLSDLAASLKaAHgggDCERYLARVFHGTATPAElVAG-LSAVRD-FARLVRNAKAKAAAGRGG----- 722 
Q01B29                      510 -egdldkrNHSTFNGLKMQLKqLP---DLDRQLARVFHGTATPSEfVSA-LTSLSR-FGEACGNMREGVE-GDLT----- 577  Ostreococcus tauri...
XP_019068350                513 egadvtssQPEIHHIIVSVLStIGrppDIQRGLTRIFHRKATAAEfIAV-IQAILI-AAKQLQRLFITEDRSTNL----- 585 
XP_002867605                502 dgsertivSPEFYLVLSSVLTaLSrssDIQRGITRIFHRTAKATEfIAV-MEAILL-AGKQFKRLGIKQDCEMRS----- 574 
O65607                      504 egseraivSPEFYLVLSSVLTaMSrssDIQRGITRIFHRTAKATEfIAV-MEAILL-AGKQIQRLGIKQDSEMRS----- 576  thale cress...
XP_002510803                502 edsdvaiiQPDFYHLLSTVLEmLGrspDIQRGITRIFHRTATASEfIAV-IQAILI-AGKQLRRLQIEEEQNNKR----- 574 
Vitvi:Vitvi030509.t01.CDS1  511 gdsdvtyvQPEVNYLLSSVLTtLGrspDIQRGLTRIFHRTATASEfISV-TQAILF-AGKQLQRLHIEEKDVDEK----- 583 
KRG91489                    484 edpdvaivQPELAYTLSLVLTtLGrapDIQRGITRIFHCTATPSEfVAV-IQAILS-AGKQLQQLNIGEGNNNTL----- 556 
NP_194284                   504 egseraivSPEFYLVLSSVLTaMSrssDIQRGITRIFHRTAKATEfIAV-MEAILL-AGKQIQRLGIKQDSEMRS----- 576  thale cress...
1NG9_A                      399 efA-----------------ElrDLLERaIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLD 461  Escherichia coli...
XP_003057616                723 --EidaaaaddddecaslasS--ALLRE-YLDAASDASVVHTCDRLLSMVDVENATNGKATAATALLPNATRFPRLESTR 797 
Q01B29                      578 --------------------S--TLLVE-LISAIADPSLRVLAETFMSALNLDVACVDKPSKTKIGLFKDDPERFPELSA 634  Ostreococcus tauri...
XP_019068350                586 --Qret------------lhS--VLLRK-LISIASSSTVINGAAKLLSALNKEAADRQDLHNLFIISDGKFPEVAEGTRR 648 
XP_002867605                575 --Mqsa-----------tvqS--SLLKK-LISVAASPAVVDNAAKLLSALNKEGAVRGDLLDILITSSDQFPELAEARQA 638 
O65607                      577 --Mqsa-----------tvrS--TLLRK-LISVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQFPELAEARQA 640  thale cress...
XP_002510803                575 --Vqak-----------tvrS--VLLKK-LILTVSSSSVVGHAAKLLSTLNKEAAEHGDLTNLIVISNGQFPEVASSNKA 638 
Vitvi:Vitvi030509.t01.CDS1  584 --Gqsr-----------svrS--VLLRK-LILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPEVAKARSL 647 
KRG91489                    557 --R-----------------P--NLLKK-LILTASSDSVIGNAAKMLSSLNIDSADLGDLTKLIIASEGQFPEVIRAREA 614 
NP_194284                   577 --Mqsa-----------tvrS--TLLRK-LISVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQFPELAEARQA 640  thale cress...
1NG9_A                      462 TLKVGFNAVHGY-----------------------------------------YIQISRGQSHLAPINYMRRQTLKNAER 500  Escherichia coli...
XP_003057616                798 ADIADAEKALEDllptlrqklidagkkekgggggglalvprlayvtvalveylIELPDTLRGVPANWARMSTNKSKKVVR 877 
Q01B29                      635 TVAAVNDAKQALadllpelrkklgipr------------leyttvggvgggewLIEVPMDKSCPVTWIKVSSNKSKKVVR 702  Ostreococcus tauri...
XP_019068350                649 VELANEKLDSLIvmhrkqlhih---------------------kleytsvagiTHLIELPLNTKVPRDWVKVNSTKKAIR 707 
XP_002867605                639 VLVIKEKLDSLIssfrkklair---------------------nleflqvsgiTHLIELPVDAKVPMNWVKVNSTKKTIR 697 
O65607                      641 VLVIREKLDSSIasfrkklair---------------------nleflqvsgiTHLIELPVDSKVPMNWVKVNSTKKTIR 699  thale cress...
XP_002510803                639 VHLAKEKLDSLInlyrkqlkmr---------------------slefmsvsgtTHLIELPADVKVPLNWVKINSTKKMIR 697 
Vitvi:Vitvi030509.t01.CDS1  648 VQSAKEKLDLLIglyrkqlrmn---------------------nlefmsvsgtTHLIELPVDVKVPSNWVKVNSTKKTVR 706 
KRG91489                    615 FKLAVEQLDSMIdfyrkqlgmk---------------------nlefisisgtTHLIELSTDVKVPSNWVKVNSTKKTIR 673 
NP_194284                   641 VLVIREKLDSSIasfrkklair---------------------nleflqvsgiTHLIELPVDSKVPMNWVKVNSTKKTIR 699  thale cress...
1NG9_A                      501 YIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLP-----HlEALQQSASALAELDVLVNLA 559  Escherichia coli
XP_003057616                878 YHPPEVVAAAAALERARERHVAESKAAWASFL---RDdaagnF-LELRAAVAAAAGLDALLSFA 937 
Q01B29                      703 YHPPEVTEAVAALERANERHMMSADAAWKEFLSSFREn----Y-ATFRAATSSIASLDALHALA 761  Ostreococcus tauri
XP_019068350                708 YHSPEVLVALDELALANEQLTVVCQAAWSNFLTGFGGy----F-AEFQAVVQALASLDCLNSLA 766 
XP_002867605                698 YHPPEIVAGLDELALATEHLAIVNRASWDSFLESFSRy----Y-TDFQAAVQALAALDCLHSLA 756 
O65607                      700 YHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFSRy----Y-TDFKAAVQALAALDCLHSLS 758  thale cress
XP_002510803                698 YHPPEVLTALDQLALANEELMVVCRAAWDSFLRSFAKh----Y-AEFQAVIQALAALDCLHSLA 756 
Vitvi:Vitvi030509.t01.CDS1  707 YHPPEVLSALDQLSLANEELMIACRGAWDSFLRAFDKy----F-SEFQAAVQALATLDCLHSLA 765 
KRG91489                    674 YHPPEVLTTLDKLSLAKEELTVACRAAWNNFLTDFSKh----Y-AEFQAAVQALAALDCLHSLA 732 
NP_194284                   700 YHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFSRy----Y-TDFKAAVQALAALDCLHSLS 758  thale cress
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