2J7N


Conserved Protein Domain Family
RdRP

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pfam05183: RdRP 
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RNA dependent RNA polymerase
This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
Statistics
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PSSM-Id: 428354
Aligned: 257 rows
Threshold Bit Score: 291.01
Created: 26-Apr-2021
Updated: 29-Sep-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2J7N_A        135 LKPLMFEQ-GCRLTRRFGPDRFFEILIPSptstspsvppvvskqpaaveeviQWLTMGQHSLVGRQWRAFFAKDAGYRKp 213  Neurospora cr...
Q5QMN4        383 FKGPYIENrRTHLQKVLGDDNVLVVKFMEissdtetd-------lstylehyHKVAEEGIVLGLRCYRFFLYKDGGKENk 455  Japanese rice
8_pfamImport    8 FKGPYIENtRTSLQKVVGDDNVLVVNFSDisrhtnagd-----nfeigchfyHHVFEDGIILGLRRYRFLIHKDGGRERr 82  
EES00122      354 FKGPYVENtRTHLQKIVGDDNVLIVKFADipdlenntd-----nlgiycqyySQVADDGIVLGLRRYRFFIHKDGGKTEk 428  sorghum
CBI28010      189 FKGPYLNKtRTHLQRVLGDENILLVKFAEdvtdrssln-----cstdsnasyNKIAREGIFVGLRQYRFFVFKDGGKEEk 263  wine grape
KRH74267      211 FKGPILQStRTHLQKTLGDDNVLLVKFAEdgsgknfrt-----haeeanalyGKFGKEGIRVGLRLYRFFVFKDGGNEEk 285  soybean
2_pfamImport    8 FKGPLMENtGTHLHNVLGDENVLTVKFADvpgeatyc--------ndiystyKEIAKKGIMLGLRRYQFFVFKDGGKEEk 79  
O82189        228 LKGYFLENtGTHLHKVLGDDNVLTVRFDQlpkestyc--------dnpyskyKEIAKNGIMVGLRRYQFFVFKDGGKAEk 299  thale cress
O82190        228 FKGHLLENtGTHLHKVLGDDNVLTVKFDKvlgvetyc--------ndlystyKGIAKNGIMVGLRRYRFFVFKDGGKEEk 299  thale cress
O82188        223 LQGPLLEHtGTHLHKVLGDDNVLTVKFADvqksssty-------sidhyftyKGIAKNGIMIGLRRYQFFVFKDGGKEEk 295  thale cress
2J7N_A        214 lrefqlraedpkpiikERVHFFaetgitfrpdvfktrsvvpaeepveqrtefKVSQMLDWLLQLdNnTw-QPHLKLFSRI 292  Neurospora cr...
Q5QMN4        456 mkeenreeenkkctssVRCYFVrtesgwnmd-------------epyilsgrTIGQARDLFMHI-R-Tv-LTLAKYMLRF 519  Japanese rice
8_pfamImport   83 ikaeknkernkkctssVRCYFVrtecdwdkg-------------vpyilsnrTIGDARKLFMHV-H-Tv-PSVAKYVARF 146 
EES00122      429 lkeekkkeknkklspsVRCYFVrmesgwerd-------------ypykladyTVNQARRLFMHI-N-Na-PTVAKYLSRF 492  sorghum
CBI28010      264 kkn---------ptssVKCYFVfmess--------------------alsgkTVHEARCIFMHA-H-Mv-SSVAKYMARF 311  wine grape
KRH74267      286 qkdp--------tsstVKCYFVrmqsgcsade-----------gadyilsnkTVSEARTLFMHA-H-MllPNLNKYMARF 344  soybean
2_pfamImport   80 kkdf--------sgkgVKCYFIrtdstssndm-----------gkpyifsgkSIHEARMHFMHV-H-Tl-PTLAKYMARF 137 
O82189        300 kkrn--------stkqVKCYFIrtgstassdm-----------enpyilsgmSIHEARMHFMHV-H-Tl-PSPANYMARF 357  thale cress
O82190        300 kkdv--------stkgVKCYFIrtdstasidm-----------qnpyifagkSMHEARMHFMHV-N-Tl-SSLPNYMSRF 357  thale cress
O82188        296 kkdl--------stkkVKCYFIrtdstafydm-----------qnpyiltgkSIYEARMHFMHV-H-Ra-PTLANYMARF 353  thale cress
2J7N_A        293 QLGLSKTYAimtle--------------------phqirHHktdllspsgtgevMNDGVGRMSRSVAKRIR----DVLGL 348  Neurospora cr...
Q5QMN4        520 ALIVSKTITldvdlsevlvklid--depcldehgkevfrDGer---------liHTDGTGLISEDLAQKCTysnsKGKLL 588  Japanese rice
8_pfamImport  147 GLVLSKTITlldgedlskidvvivddvpckdkygnivlkHRea---------liHTDGTGLISEDLAKKCPtyvfKGNLL 217 
EES00122      493 ALILSKTIKldvdfskvnvkiid--depcreesgeiavqDGkd---------liHTDGTGLISVDLARNCPssifKGNFL 561  sorghum
CBI28010      312 SLILSKTVKldvdlstvniqridd-epgrdedghvvydeDWkp---------liLTDGTGFISEDLALRCPnnlcRGKYM 381  wine grape
KRH74267      345 SLILSKTLKlnidlttvsvqkip--deyckdangnimvdNEkp---------riLTDGTGFISRDLALLCPnnvyKGSNL 413  soybean
2_pfamImport  138 SLILSKTRKlevdtsriafqqidd-ihchdqnnndvldkNQkp---------ciHSDGTGYISEDLARMCPtdifKGKHV 207 
O82189        358 SLILSKTKKlevdmteitvmqidd-ihchdqsnndvldkNGkp---------riHSDGTGYISEDLARMCPlnifKGKSM 427  thale cress
O82190        358 SLILSKTKTlevdmtgitfeqidd-ihchdqddkdvldkNGkp---------ciHSDGTGYISEDLARMCPvnifKGKSM 427  thale cress
O82188        354 SLILSKTKTlevdmtgitfdqidd-ihchdqdgkdvldkNKkp---------ciHSDGTGYISEDLARMCPlnifKGKCL 423  thale cress
2J7N_A        349 g----------------------------D-VPSAVQGRF----GSAKGMWVIDvd---dTgdedwIetYPSQRKWecDF 392  Neurospora cr...
Q5QMN4        589 epqdivdcaa----------sklmgsnntTeYPLLIQLRLfyngSAVKGTVLVDkrlpprT-----IhiRPSMLKI--KT 651  Japanese rice
8_pfamImport  218 r----------------------------IhDPLLMQVRMfyngLAVKGTLLVVrklperT-----IhvRPSMIKV--NS 262 
EES00122      562 kdavdsk----------------ghqhltTkHPLLIQFRMfhngYAVKGTLLADkrlpanT-----IhiRPSMIKI--HG 618  sorghum
CBI28010      382 nn--------------------------gNsDPLLIQCRLfnngCAVKGTLLLNrklpprT-----IqiRPSMIKV--ET 428  wine grape
KRH74267      414 ennciqeinnlveledmsnamgeaeqlstHePPLLIQCRLfhmgHAIKGTLLVNrklpprT-----IqvRPSMIKV--EK 486  soybean
2_pfamImport  208 rsdnmq------------------antygKePPMLIQFRMfhygYAVKGTFLLNkklpprT-----VqvRPSMVKV--SE 262 
O82189        428 rsnni-------------------qgtcvQePPLLIQIRMfndgSAVKGIFLLNknlppqT-----VqvRPSMIKV--YK 481  thale cress
O82190        428 rsnniqsknl----------nfegqgpcgQePPLLIQFRIfyngYAVKGTFLTNkklpprT-----VqvRPSMIKV--YE 490  thale cress
O82188        424 rsesi-------------------qeacyQdPPLLIQFRMfydgYAVKGTFLLNkklcprT-----VqvRPSMIKV--SK 477  thale cress
2J7N_A        393 v-------dKHqr-------------------tLEVRSVASELkSAGLNLQLLPVLEDRArdkvKMRQAIGDRLINDLQR 446  Neurospora cr...
Q5QMN4        652 ypelsgvqsVNsldivsarnakkslsgvqsvnsFEIVSTSNRSgRTFTSNNLIALLHYGG----VPEEFFMELLQTAIEE 727  Japanese rice
8_pfamImport  263 dpsl--sggHSfn-------------------sLEIVSTSNRPkRALTSRFLITLLQYGG----VPADCFMELLGKALKD 317 
EES00122      619 dens--fgeKSfn-------------------sLEVITTSYRPkRAFTSRFLISLLHYGR----VREEFFLDLLRNALED 673  sorghum
CBI28010      429 dpkl--sdtQTvn-------------------sVEINGTSNQPrRSYLSKYLIALLSYGG----VPNEYFMNLLKDALED 483  wine grape
KRH74267      487 dps---vhmQSin-------------------sLEVVTTSNKPkRGYLSKHLIALLSFGG----VPNEFFMDLLRSNMED 540  soybean
2_pfamImport  263 dpal--ynfSTfn-------------------sLEVVTTSNPPrRTKLSRNLVALLSYGG----VPDEFFLDILRSTLEE 317 
O82189        482 dknl--snfSTfn-------------------sLEVVTTSNPPkRAKLSKNLVALLSYGG----VPNDFFLDILLNTLEK 536  thale cress
O82190        491 drtl--snlSTfn-------------------sLEVVTTSNPPrKARLSRNLVALLSYGG----VPNDFFLNILRNTLEE 545  thale cress
O82188        478 dpsl--snfSTfn-------------------aLEVVTTSNPPkRTKLSKNLVALLSYGG----IPNEFFLDILLNTLEE 532  thale cress
2J7N_A        447 QFSEQKHAlnrpvefrqwvyesyssratrvshgrvpflaglPDSQEETLNFLMN-SGFDPKkqKYLQDIAWDLQKRKcDT 525  Neurospora cr...
Q5QMN4        728 ADNARFDYagaln------------------------iafnYADMEDSMPARMIlSGI-PLeeSYLQSRLDFLSLLE-RK 781  Japanese rice
8_pfamImport  318 VEKARHKTrdsle------------------------vafnHGDMDDLMSARMIlSGIRPEdeAYLQHQLTTMTKEE-RE 372 
EES00122      674 VNNARHRPrnsle------------------------vafnHADLDDSMSARMIlSGIQPEdeAYLQSQLALMAKVE-RK 728  sorghum
CBI28010      484 APSVQSSKraalr------------------------vslrFGEMDDSIVTRMIlSGI-PIdePFLHHCLSFMVNEE-RK 537  wine grape
KRH74267      541 ANHVYSNKrsalr------------------------asinCGEKDEYNAAEMIlCGI-PLdePFLKHHLSRFAREE-KK 594  soybean
2_pfamImport  318 SKTVFDNKraavr------------------------aarnYGDMDEYNALQMImSGI-PLdePHLKDHLSILLNTE-KN 371 
O82189        537 KKTIFFKVraagk------------------------aalhYGNMDDKNALQMImAGI-PLdePYLKHYLSKLLKLE-KD 590  thale cress
O82190        546 SKTIFYSEraafk------------------------aainYG--DDQYTADMIlVGI-PLdePYLKDRLSYLLKTE-RN 597  thale cress
O82188        533 SKSIFYNKraaln------------------------aalnYGEMDDQNAAQMIlVGI-PLdePHLKNYLSILLKTE-KN 586  thale cress
2J7N_A        526 LKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFsS-KfrdeeesftllsDCD-VLVARSPAHFPSDIQRVRAvfK-PEL 602  Neurospora cr...
Q5QMN4        782 GIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILdYgQ------------VSGdVLVYKYPGLHPGDIHVLKAt-YsSDI 848  Japanese rice
8_pfamImport  373 GFKQGRLPVNQCYYLMGTTDPTGTLKPHEVCVILdHgP------------ISGeVLVYRHPGLHFGDIHVLTAt-YsEAI 439 
EES00122      729 GLKEGRIPIDDTYYLMGTTDPTGTLKRDQVCIILdNgQ------------LSGkVLVYKHPGLHFGDIHILTAt-YiDGL 795  sorghum
CBI28010      538 GLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILdHgQ------------VQGrVLVYKHPGLHFGDIHVLNAt-YvEAL 604  wine grape
KRH74267      595 KLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHeNsQ------------IVGdVLVYRNPGLHFGDIHKMDAt-YvKEL 661  soybean
2_pfamImport  372 DLKAGKLLVTESYYLMGTVDPTGKLKQNEVCVILeSgQ------------ISGdVLVYRNPGLHFGDIHVLKAt-YvKAL 438 
O82189        591 DLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLA----------------KSQdVLVYRNPGLHFGDIHILKAt-YvKSL 653  thale cress
O82190        598 ALKAGRFPIDESYYIMGTVDPTGELKENEICVILhSgQ------------ISGdVLVYRNPGLHFGDIHVLKAt-YvKAL 664  thale cress
O82188        587 DLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILeSgQ------------ISGeVLVYRNPGLHFGDIHILKAt-YvKAL 653  thale cress
2J7N_A        603 H----SLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPE-IvdgF---Vn-aEMp---------LEP-DLSrylkkd 663  Neurospora cr...
Q5QMN4        849 EkvvgNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKlLe-hFk-pSkpwVPaitpn-gtkqKGPeDFNesele- 924  Japanese rice
8_pfamImport  440 QdfvgDSKYAILFPVSGPRSLADEMAGGDFDGDMYWVSRNPQlLk-yFk-pSepwDPrsppr-kakqEKPqDYDeskle- 515 
EES00122      796 EkivgNSKYAIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQlLe-gFtkqRkpwVRriqpt-ktelKKPqDYTgpkle- 872  sorghum
CBI28010      605 EefvgNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQlLq-yFr-aSepwMRkrstr-hvpsKRPtDFSpdele- 680  wine grape
KRH74267      662 EsyvgHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQlLq-yFr-kGdpwIEnsvpl-dssvKKPsEFSpeele- 737  soybean
2_pfamImport  439 EeyvgNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKlLe-hYk-pSepwVSssppskiytgRKPsELSpemle- 515 
O82189        654 EqyvgNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKlLe-hYk-pSepwVSssprskiytgRQPsELSpeqle- 730  thale cress
O82190        665 EdyvgNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKlLe-hFk-pSepwVSsskpskiycgRKPsELSeeele- 741  thale cress
O82188        654 EeyvgNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPElLe-nFk-pSepwVSltppsksnsgRAPsQLSpeele- 730  thale cress
2J7N_A        664 kttfkqlmashgtgsaakeqttydmIQKSFHFalQPNFLGMCTNYKErLCYi---------------nNSVSNKPAIILS 728  Neurospora cr...
Q5QMN4        925 --------------------rvlfhEFLKTRFa-PSYARATAATNWL-VYMdrlltv-----sldeseKKLIEKKMLKLV 977  Japanese rice
8_pfamImport  516 --------------------hilfrEFFRTRFt-PSYVLGAAADCWL-VYMdrlltce---vqedkkeWESIKAKMLELV 570 
EES00122      873 --------------------sllfhEFLRARFt-PSYVLGAASNCWL-ALMdrlltg-----gvpkseRQAIKKKMLDLV 925  sorghum
CBI28010      681 --------------------helfqLFLTTRFq-TSSAIGMAADNWL-VFMdrlltlr----ddcsdeKECLKRKMLELT 734  wine grape
KRH74267      738 --------------------eelfrLFLKTRFq-PSYAMGMSENSWM-ALMdrlltln---nctneneKERVKENMLKLI 792  soybean
2_pfamImport  516 --------------------eelfrLFLKARFh-SSNVIGAAADSWL-RIMdqfltlgddrvketaerKSKMVKTMLKAI 573 
O82189        731 --------------------eelfkIFLKTGFs-PSSVIGQAADSWL-AIMdrfltlg----denvkeKAEMKKKMLKLT 784  thale cress
O82190        742 --------------------eelfkMFLKARFc-KRDVIGMAADCWL-GIMdpfltlg----desakeKYERKKNILKLI 795  thale cress
O82188        731 --------------------eelfeMFLTAGFh-ASNVIGIAADSWL-TIMdrflilg----ddraeeKAEMKKKMLELI 784  thale cress
2J7N_A        729 SLVGNLVDQSKQGIvfnEASwaqlrrELlGgalSLP--DPMYKsdSWlgrgeP----THIIDYLKFSI 790  Neurospora crassa
Q5QMN4        978 DLYYLALDAPKMGN---KVN------IPrD---LMVkqYPHFMdrSPsy------hsSSILGKIYDKA 1027 Japanese rice
8_pfamImport  571 DIYYEALDAPKSGN---KIT------MPrH---LKVevYPHFMegKGf---tPpyisTSVLGKIYDLA 623 
EES00122      926 DIYYLALDAPKEGN---KIT------VPgE---LKVkkYPHFMerDEk----KsytsTSVLGKIYDEV 977  sorghum
CBI28010      735 DIYYDALDAPKSGM---KVN------VSkE---LKAekFPHFMgrESsy------hsTSILGQIYDAV 784  wine grape
KRH74267      793 DIYYEALDAPKSGR---KVQ------VPnD---LIAelFPHYMekDKsf------tsTSILGLIYDEV 842  soybean
2_pfamImport  574 DIYYDALDAPKNGA---KVD------LPlD---LKFdsFPHYMerKNk----KifksTSILGLIYDTV 625 
O82189        785 DIYYDAIDAPKTGT---EVN------LPlD---VKVdlFPHYMerNKtf------ksTSILGLIFDTV 834  thale cress
O82190        796 DIYYDALDAPKKGA---KVD------LPpD---LEIknFPHYMerDPk----RdfrsTSILGLIFDTV 847  thale cress
O82188        785 DIYYDALDAPKKGD---KVY------LPnK---LKPdiFPHYMerDKkf------qsTSILGLIFDFV 834  thale cress
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