7W84,7ROZ,2J7N


Conserved Protein Domain Family
RdRP

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pfam05183: RdRP (This model is not part of the current CDD release)
RNA dependent RNA polymerase
This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
Statistics
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PSSM-Id: 516679
Aligned: 242 rows
Threshold Bit Score: 288.68
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7W84_A         383 ITPSKiyCLGPEEEV-SNYVVKYHseyaSDFARVTFVD----------------EDwsklspnalsarteqgffskplkt 445  Zea mays
21_pfamImport    1 IMCLR--LLPIQEEK-SCRLQRMFg--sDRFLYLDLPEfnsskidg-ftkddivKI------------------------ 50  
XP_007705751   349 IMCLK--LLPIQEEK-SCRLQRMFg--sDRFLYLDLPEfnsskidg-ftnddmvKI------------------------ 398 
XP_001940806   571 LLSLR--LSSVQADN-SCRLQRIFg--sDRFLYLNSPLfrsarvdsrhdtatmdQI------------------------ 621 
XP_008027762   528 VMCLK--LSPVLADR-SCRLQRMFg--sDRFLYLDLPKfdvgktgr-fdkkqmqQI------------------------ 577 
XP_003843139   567 VFKLE--LSQIEAER-SCQFQRMFg--sDRFLYLTFPSfsenipkr-ftrsqmrQI------------------------ 616 
Q0V1X8         559 VFRLE--LLPIQKEK-SSLFQRMYg--sDRFLYLMFPSfqdkpdr--ftlaqlpFL------------------------ 607  Parastagonos...
XP_007777658   164 LFRMT--LEPLQIEQ-SCRFQRAFg--gDRFLYIDVPSlfeadlps-----------------------------hlknq 209 
17_pfamImport    1 LFKIR--LQSLQTEKdSCRFQRAFg--gDRFLYLETPPlkngnvpg-hlkgqeqNI------------------------ 51  
XP_007680714   356 LFDLE--LYPARPEK-SHPLQRKFg--gHRILVVDFPDldklpkyiigqkgnitARi----------------------- 407 
7W84_A         446 glyHRI--LSILKEGFCIGPKKYEFLAFSASQLRG------------NSVWMFasn-----------------sslTAEN 494  Zea mays
21_pfamImport   51 ---RKKwqEWLLTE-HSFLGRKWRVFHVDNIKRKHkshqd--dmlhnKKIVLFategtg------------ieqpyTVGE 112 
XP_007705751   399 ---RKKwqEWLLTE-HSFLGRKWRVFHVDTIKRKHkshre--dmlhdKRIILFategag------------ieqpyTVGG 460 
XP_001940806   622 ---RKQwqAWLLTE-HSFLGRKWRVFHIEDLKKGKntrrk--dvmhdKRLVLFategwg------------iekpcSIGQ 683 
XP_008027762   578 ---RKQliEWLKEE-HSFLGRKWRAFHIDTLKKGKgtrrs--damhdKRIVLFatqgig------------ieepcTIHR 639 
XP_003843139   617 ---ENKwqSWLMQE-HSFLRRKWRAFYVEPIQKRNtgrka---ddadKRVVLFategld------------itkpmSVNE 677 
Q0V1X8         608 ---QTQwkIWITQH-HSFLGRKWRVFHVEPMKRKGgsrksg-ddaadTRVILFategag------------idqpmSVGE 670  Parastagonos...
XP_007777658   210 cnlKRRlrEWLQVE-HRFLGRTWRALMLEDRKRKKsytqk--dpdkgQRITLFatsgcdsiwn---eplsvnkpetSIGE 283 
17_pfamImport   52 ---ADRfeDWLTCERKEFLGREWEVIHVEPFASKKqslqrqhtetrgYRVILFatkgcdidtrkprkirsgtrhemTVFD 128 
XP_007680714   408 --------LEMLKSDHMLLGQKWTAFLNKKRKVTSvdpsy--ddsksFQISFFavega-------------gldsiNVVE 464 
7W84_A         495 IRRWMGHFE-DI-RSVSKCAARMGQLFSSSRQTFevssydVEvipDie-------------vTTdgtkYI---------- 549  Zea mays
21_pfamImport  113 MLNKFLPMDlNKeQSFCKAFARIDLGLSRTIPTL------CFd-aEqirrvrdsrskgdqedTRfndtTLdwppf-part 184 
XP_007705751   461 MLNKFLPVDlNKnQNFCKAFARIDLGLSRTTPTL------CFs-tEqirhvddktstddpedTQfndtTLdwppf-pdgt 532 
XP_001940806   684 MLNQFLPFAsNAdQSVCKAFARIDLGLSRTIPTL------CFe-pGqiirvkdklatldfedTRfndiSLhwppf-pdgt 755 
XP_008027762   640 MLNKFLPLAlNRdQPICKAFARIDLGLSRTIPTL------VFs-pEqiefvhdklstddledTQfddrKLdwptp-pegt 711 
XP_003843139   678 MLNEFLDFDiNQwQNLYKAYSRIALGLSRTIPTL------VFk-pSqirlvkdirsdgtpeaNEfndeGLdwdekcsqpq 750 
Q0V1X8         671 MINGFFNFEqNMdQNFCKAFARLDLGLSRTIPTL------SFk-pSqirrmpdtyadrtpeaQEfndaTLdwteqydrtp 743  Parastagonos...
XP_007777658   284 LIDWFLCIKkNShQPFPKAYARLELGLSRTHPAL------IFr-pSqirriqdvhadgtpeaTCfndqALlwedihdpet 356 
17_pfamImport  129 LINWFMPLAkNShQPYLKAFARISLGLTATTPTL------QFk-pSqvryvtdivadgeledPAfndkSLvwrndkrpkr 201 
XP_007680714   465 AAGWAVPLrnNAeQYAAKAYSRLDLPVSRTDATI------VFa-pDaiehiadimsddvpdaSDfndaSLpflrsdqvpv 537 
7W84_A         550 -FSDGIGKISTRFARQVA----KLIGLdpAHpPSAFQIRYGGYKGVITIDpt--------sFfN-LslRPSMKKFesKSt 615  Zea mays
21_pfamImport  185 vMDDGCCVMSVGAAKKIWdlytKATGVt-DPlPSAFQGRIGGAKGIWVINaerft-kepthLePwImiNDSQWKFe-PPn 261 
XP_007705751   533 vMDDGCCVMSVGAAKKIWdlytKATGVt-DPlPSAFQGRIGGAKGIWVISaekft-kdtdhLePwIeiNESQWKFq-PPn 609 
XP_001940806   756 vMDDGCSIISVGAALIIWqlykKATGTt-GPlPSIFQGRIAGAKGVWIISaesyt-kdpehLkPwImiNASQWKFn-PPe 832 
XP_008027762   712 vMDDGCCVISVGAAIEIWrlikEATGAh-APmPSAFQGRIGGAKGLWIISaepft-kdpyhLgRwIkiNKSQRKFn-PPn 788 
XP_003843139   751 vMNDGCARISVGAARIIWemycRATGSd-EPlPSAFQGRIRGAKGMWMVSaeaht-rdeehNdIwIeiSDSQSKYe-PHe 827 
Q0V1X8         744 vMNDGCARVSVGAALLIWkfcqDATGSd-EPlPSTLQGRIGGAKGMWMISaepht-rdpahLdIwIevTDSQLKFe-PAq 820  Parastagonos...
XP_007777658   357 vMNDGCARMSVGAAFEVW----KALGKp-GPvPSVFQGRVAGAKGLWMISaptys-ehpddReVwIeiSDSQNKFe-PHt 429 
17_pfamImport  202 vMNDGCSLISVGAARKLW----EQTNRt-EPlPSTFQGRIGGAKGMWMISdspdt-tdsrhLkVwIqiSDSQLKFk-AHs 274 
XP_007680714   538 aMTDGCGYITYAAARRVQ----SILNL--TWlPSAFQVRIAGAKGLLVVRqditqgdmaqeR---IglTQTQRKL--QYs 606 
7W84_A         616 --------------mLNITNWSKSQ-PCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK-------------- 666  Zea mays
21_pfamImport  262 dqsp-------yhrtFEVLNYSSTPsPSELHSLFIPILADRGVPKEAISDLMFDSLEKERMNLLNVlqdttkvhewvyrn 334 
XP_007705751   610 dqsp-------yhrtFEVSNYSSTPsPSELHSSFIPILADRGVTKEAISDLMLDSLEKERINLLNVlqdatkvhewvyrn 682 
XP_001940806   833 dalld----hehhrtFELSNYSSSPtPSELHISFIPILVDRKVPLTVIDSLMKDSLEAERTKLLDLlpdpvkmydwvhrn 908 
XP_008027762   789 dnsv-------hhrtFEVSNYSLPPsPSELHTSFIPILEDRGVPKSVISDFVRNCLEKESMELLEIirdparvyhwvyqn 861 
XP_003843139   828 adkndat-fnshrltFNYVKHSHVNgSTDLHISFIPILVDRGVKRDVIADFIIKHLNVERAQLLDMlsepvklhnwvtk- 905 
Q0V1X8         821 edqaddrpynshrltFNYIKHSFVNgSSDLHISFIPILVDRGVQKSTIAKLMISRLDDERKQLLEMlddpvrlhnwvtkq 900  Parastagonos...
XP_007777658   430 edlsdel-cdknrlaFEVLTHSKQPrATALHVSFIPILLDRGVPREQLKDLVVDYLGYERQQLMENvtnpvwlrkwvneq 508 
17_pfamImport  275 edqsese-ydphrltFDLHSTTGTAgESSVYLSFFPILENRGVSAKALQKLFESHLDREREKILASvtnrvglrtwlnqq 353 
XP_007680714   607 dsdld----dparrtLDVVDYSKSVrSSHIPPGFLPVLRDRGVPKEAILDVVGEQVKLETSGFLQAlksrstlhrwvlcq 682 
7W84_A         667 -----------------EAAlsvlgkigGGDTKTAADMLLQGYEPSsePYLLMILKAHRANRLTDIRTRCKIHVQKGRVL 729  Zea mays
21_pfamImport  335 ---gantklreetpgraGQP--------ASLEEKVLNLLESGFDPLkfPYLAQNLESFILSRQIFQEAKLRVLLPKSTFL 403 
XP_007705751   683 ---gantklreethgrvGQP--------ASLKEKALNLLESGFDPLkfPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFL 751 
XP_001940806   909 ---gtktqsgndvpwqaAMP--------VSLEEKVKLLLESGFSPAkfQPLAQSLQRFIQAKQILQESKLRVPLAKSTFL 977 
XP_008027762   862 ---gaktkpgedaswqgGQP--------ITLEEIIQHLLQSGFETLkcRYLAQCLMRFIEGKQMFQEAKLRISLPPSTFV 930 
XP_003843139   906 ----qssatsgvipweaALP--------VSQSEKVKLLLRAGFTPQdsPFLAKVLINLIRQRQSVMEQKLRAPLGSATFL 973 
Q0V1X8         901 ---gsatpalgilpwqaALP--------LTLPEKAKLLLRTGFQPYqsPFLARTLKRFVQQRQLWMEEKLRAPLGRATYL 969  Parastagonos...
XP_007777658   509 nslseernrqgdlvwraGLP--------LQPVEEAIFLLESGFTPTsnQFLAKSVQKLVEQYLLKLKVRLTVPLGRSSNL 580 
17_pfamImport  354 nslaeernrdenmtwqaSMP--------LQLHEKAILLAESGFDISc-DYLADVAHRLLAKSLRLLRQNIRVPLPRCTYI 424 
XP_007680714   683 rnvvgfraaaggivltaGFP--------ANTIERILFLLESWFEPAqcPYLRKQVLDFAGHVFDVKAKAWKLHLGSCTSV 754 
7W84_A         730 IGCLDETCKLEYGQVYIRItK---Nhk--eQkyseqpffcnDDgkTAVIVGK-VAITKNPCLHPGDVRVLEAvyD-PGLd 802  Zea mays
21_pfamImport  404 YGVADPKGVLNPGEIQVLFsWp--FldettN----------ER--YLELRDLnVLVARHPACRRSDIQKVRTv-IhPEL- 467 
XP_007705751   752 YGVADPLGVLNPGEIQILFsWp--FvdettN----------ER--YSDLRDLeVLVARQPACRRSDIQKVRTv-IhPEL- 815 
XP_001940806   978 FGIVDPFEVLEPGQIQVQFsSs--FaddttD----------EK--YLGLRDMeVLVARQPACRRSDIQKVRTv-IrPEL- 1041
XP_008027762   931 YGVPDPFGVLKPGEIHLQFsTqesFmekmtD----------ET--YLLPRETeVLVARQPACRPSDIQKVRKi-VhPAL- 996 
XP_003843139   974 LGLADPEGVLEPGQVHISFsLp--FvdefsR----------QT--YRHLDGLeVLIARQPACRRSDIQKVRVv-TySKL- 1037
Q0V1X8         970 IGLADPLGILKPGEVHVQFsKp--FldeygR----------NT--YRNLAGEeVVITRQPACRRSDMQKMRAv-ShPQL- 1033 Parastagonos...
XP_007777658   581 WGIADPCSTLEPGEVHLNFsTn--FqdeksG----------EV--YPLLDGRdVLIARHPALRRSDIQRARAv-FkPEL- 644 
17_pfamImport  425 KGVADPLGVLKPGEIHVHFtRr--FvdevsG----------DC--LSYLNNRnVLVARNPALRASDIQKVRSt-FnLRL- 488 
XP_007680714   755 MMIPDWTQTLKPGEAYLSFsKp--IkdgtsG----------RV--WSSLAGMdILVARNPCIRNSDMQKLRAv-ScAAL- 818 
7W84_A         803 aRGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDK-Li------PEKvDAPMDYTatrprimd------------- 862  Zea mays
21_pfamImport  468 -SHLVDVAVFSSKGSFPLAGKLQGGDYDGDIFWICWENTlVqpffnapAPV-QPPEPSLygiekrteklkhiv------- 538 
XP_007705751   816 -SHLVDVAVFSSKGPFPLAGKLQGGDYDGDIFWICWEDTlVqpffnapAPV-RSPNPSLfgikkiteklkdiv------- 886 
XP_001940806  1042 -SHLVDVVVFPSRGRYPLAGKLQGGDYDGDIFWICWEPQlVlpflnapAPV-QSPDPARyeikkttakvrdvi------- 1112
XP_008027762   997 -SHLVDVAVFPSIGRYPLAGKLQGGDYDGDIFWICWEPTlVqpfsnapAPI-ESPDPLVhgistmakkmmeii------- 1067
XP_003843139  1038 -AHLRDVIVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDlVesfknapAPL-APPGPEEygikkdpekinevmn------ 1109
Q0V1X8        1034 -SHLVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDlVvpflnapAPL-NDLEPQKygikkdtrkltdim------- 1104 Parastagonos...
XP_007777658   645 -SHLTDVIIFSAKGRFPLAAKLQGGDYDGDTFWVCWEPDlVrlfknapAPF-RPPKPENygikvertklael-------- 714 
17_pfamImport  489 -GHLKDVVVFPTRGTFPLAGKLQGGDYDGDTFWICWEPEmVepfknapPPL-EDPDPKKcqikvdkrklad--------- 557 
XP_007680714   819 -AGIFDVIVFSTQGPRSLASKLSGGDYDGDIAWVCWDPRlVlpfknapAPW-KLTDIKNfgivkdntklgevlaiissng 896 
7W84_A         863 ----------havtleeiQKHFVSYmINDTLGAISTAHL-IHADRdpLKARSPECVQLAALHSMAVDFAKTGAPAEm--- 928  Zea mays
21_pfamImport  539 -----dvkrpdkvdaflkRAFEFRD-HSSLLGQATILAEsQAYSE--NCVHSGTLEKLYDVHDLLVDASKQGYILTqsky 610 
XP_007705751   887 -----dtkrpdnvdtflkRAFEFRD-HPSLLGLATILAErQAYSE--NCVHSGTLEKLYDVHDLLVDASKQGYILTqnky 958 
XP_001940806  1113 -----dtrnpgdvdrlleMAIEARS-KSSMLGMVTVFAEkQAYRE--NCIHSATLEALYDMHDLLVDAPKQGYFLSqadf 1184
XP_008027762  1068 -----dkqdpenvdiflrEAFAFRD-YPSFLGQVIILAEkQAYKE--NRIWSPVLSWLYNMHDLLVDASKQGYILTleny 1139
XP_003843139  1110 ----prdpsngsfdlflkKAFEFRI-APSLLGKVTNFLEkQAYKE--NKIFSIKIKALCDVHDLLVDAPKQAFKFTdddf 1182
Q0V1X8        1105 -----nphdlstvdnllkEALEFRM-TQSLLGKATTFAEkVAYKE--NRIYSERLNALYDVHDLLVDAPKQAYRFDdedf 1176 Parastagonos...
XP_007777658   715 ------ttgpdiidsfleRSLAFRS-NASMLGRATNDHEsLSYTK--NTLDSPGTNALADLHDLLVDSAKNGYVFDesay 785 
17_pfamImport  558 ------mckgdsiseflrESFKFRC-KPSLLGQATKFHErLVYME--GSLATERSRALADLHDLLVDYSKNGYEFDkddf 628 
XP_007680714   897 evdasltldenavrrwlhRGIASRM-NSSLLGTVTNLHAkLTYG---GDISSEGATLLADLHDHLVDADKQGYSYTseaf 972 
7W84_A         929 ------------------------pLAlRPRE--FPDFMerWEr----------------Pmy-vsNGVLGKLYR 960  Zea mays
21_pfamImport  611 nss----------------vktlceNPk------DPAYKraAKdcknarisidtlkcrekkygykpDNILDYLYF 663 
XP_007705751   959 nss----------------vktlceNPk------DPAYKraAKdckntristdtpkcrehkygyksDNILDYLYF 1011
XP_001940806  1185 dlc---------------kqklglkEPk------QPAYKcaMEdcanaknstkveecrkrnyspklNRVIDYLYF 1238
XP_008027762  1140 nrf----------------vrqkckNPk------QPAYKraIEdctnakgpsdmetrrkkdyrpnlNNILDYLYF 1192
XP_003843139  1183 kdli--------------lkklkcgNPk------IPAYKqaMDdnaksreigeg-kkgmkeyngnpKNILDHLYF 1236
Q0V1X8        1177 srlv--------------rqelrcgNPk------KPAYKnaMEasakskamgdegndtlkglkhkpDNVIDYLYF 1231 Parastagonospora ...
XP_007777658   786 r-------------------eychkNPhIGKItaQPAYRqyIKelagsrdvn------prkfrpnkQHIADYLLF 835 
17_pfamImport  629 ds--------------------fkrihgLPLTlrRPKYEtaREndceatktkarsypisnTiy-srKSILDRLYF 682 
XP_007680714   973 eawrgryvdiiprslpgvahwrfttKThDEPSkaKPNF----------------------------SDIVDYVYF 1019
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