Conserved Protein Domain Family
Fip1
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pfam05182: Fip1 (This model is not part of the current CDD release)
Fip1 motif
This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor.
Links
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Statistics
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PSSM-Id: 516678
Aligned: 81 rows
Threshold Bit Score: 66.8122
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
EKD02446     177 DVDVAQFegS-GQMWRRPGSDISDWFNYGFDEVTYPKFLKYRQDM 220
EME41060     140 DIDADLA--EnSKPWRLPGTDAKDFFNYGFDEYTWASYCMKQQMi 182
XP_016757440 178 DIDADLA--EhSKPWRLPGTDQTDYFNYGFDEYTWTQYCVRQQTM 220
XP_007776296 161 EIDVDLA--EhTKPWRLPGADQSDFFNYGFDEFTWEMYRLKQQSM 203
XP_008025047 140 DIDADLA--EeQKIWRRPGEDQSDYFNYGFDEFTWELYRQRQVAM 182
GAC75266     368 DIDLESL--A-DKPWRRYGADLTDYFNYGFSEDSWSVWRAKKEHM 409
XP_003958262 148 QIDPEVL--K-EKPWRQPGANLADYFNYGFNEFSWMEYLDRQEKI 189
XP_002554527 165 DIDPEVL--K-EKPWRQPGANISDYFNYGFNEQTWMEYLHKQEKL 206
Q4QJI4        64 GYDIALM--A-KRPWAEPGAKLSDYFNYGFNEQSWRVYCAMQEKG 105 Leishmania major
Q57Z17        71 GYDIAQM--Q-KRPWDEPTANLRDYFNYGFNESSWRLYCSMQAEG 112 Trypanosoma brucei
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