Conserved Protein Domain Family
RNA_pol_Rpc4

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pfam05132: RNA_pol_Rpc4 
RNA polymerase III RPC4
Specific subunit for Pol III, the tRNA specific polymerase.
Statistics
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PSSM-Id: 398686
Aligned: 168 rows
Threshold Bit Score: 67.3895
Threshold Setting Gi: 124446406
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAZ80919     428 FPTMLPQ--LvaplskekksheasiaptdpkpsstekhrmgsstLPHLDINPQARTTVLPQPSGPPPSSAPTETRMPPPP 505 Perigord truffle
XP_001709401 174 FPAHLPV--Akmt----------------------------rtqSAARARSQSAPGPISSILATGSHGDGRSLASYLQKD 223 Giardia lamblia...
EED86486     366 FPTRLPHldNnsmv---------------------------sstKSGKKAVKAEVDEDGLELVGSANVDTSMDIPTAATS 418 Thalassiosira p...
CBN74336     325 LPTKLPR--Plaac---------------------------qrgKDGASAPVRGKGKGKGKATGGPAVKEEAGESGAGGA 375 Ectocarpus sili...
EIM19884     277 FPKTFPKfag--------------------------------ppKLANTDKKVSFADEDDKKESSESDKMDVKEESK-PD 323 Wallemia mellic...
EOR04614     284 FPKTFPKfsa--------------------------------ppKQANTDKRVSFAGADQEKNQDEDDKEKEKDTKKDQD 331 Wallemia ichthy...
XP_003028926 269 LPHPFPV--Lvqptpidgmdvde--------msapnsrhvsfapDVKPAAVPASGVTVKKEPGVKKEPADCVLDGTERLD 338 Schizophyllum c...
EEH59882     106 LPHDLDH------------------------------------------------SVEFLTMRSPGEAVISQGKADANLV 137 Micromonas pusi...
A0CFC2       140 LPNKLPF-------------------------------------------------HDIGKTQKYVEEVKGDQAQKQLKD 170 Paramecium tetr...
XP_006679566 255 FPLMLPK-----------------------------------------------------MADEDATTTTVEGDAFASNS 281 Batrachochytriu...
CAZ80919     506 SMP---KQSLKAQQALLEAFPPp-------------GIAGKLRVHKSGRMTILW-Gnpvd-gepFAMDVSRGTDCLFLQE 567 Perigord truffle
XP_001709401 224 GAMvppGGSTDTVSSQQSDVPTvqnksp--ittfgeGKIGRLLRYRSGKVVLVLnGg-------ITMNLTQGNKADFAEL 294 Giardia lamblia...
EED86486     419 VSSsatVGGALGYDDTLKDCAP--------------GKYGKIVVYKSGRTELVV-GggdsgrpeVRMLIHEGLQCGFRQE 483 Thalassiosira p...
CBN74336     376 AAGatgGKGTGAAAEKASEIAAddvafdrglrrmrpGKIGKLYVHQSGKARLVI-Gg-------VSLVVHPGLPVSFVEQ 447 Ectocarpus sili...
EIM19884     324 VKPdvkPDLSEVDQTGHDDDAE--------------GEIGELLVYEDGQVKMHV-Gn------gIVFDMNRATQPSFVQH 382 Wallemia mellic...
EOR04614     332 KKPdtkPDLSKLDQISQDDDAE--------------GEIGELLVYEDGQVRIHL-Gn------gQVYDLNRATQPSFLQN 390 Wallemia ichthy...
XP_003028926 339 ------------------------------------GVIGTLLVRQSGRIQMEL-Gn------gAIYDVTPSTQPSFHQA 375 Schizophyllum c...
EEH59882     138 TDSsiqDQLFEPTSHKLSSEAD--------------RQVGELTLQNDGTVEVRF-Td-------AEFDVLHGSSYAHSEQ 195 Micromonas pusi...
A0CFC2       171 YYDecyDSSGIQLQKQFTNLSNkad---------vgIHIGKISIAADGSAIWKA-Gr-------EEFEIVQGITQDLDQK 233 Paramecium tetr...
XP_006679566 282 RSEsarSQPSTQTQSQPKHQFA--------------GKAGQFIVRKSGRTTLMI-Gg-------VEFEVKHTPVINFTQS 339 Batrachochytriu...
CAZ80919     568 AVAV---------------------KEvspwgEEdldekgarkgA-AFSLGQVKGRYVVSPDF 608 Perigord truffle
XP_001709401 295 LYSL---------------------DAq----KQ----------T-AHALGPILGRgtfavdc 321 Giardia lamblia ATCC 50803
EED86486     484 AVSI---------------------DP-----EE----------AtFVPMGDVGKALVVVPDV 510 Thalassiosira pseudonana CCMP1335
CBN74336     448 GVSI---------------------DAk----QK----------T-FCSFGQVTKRAVCTPDF 474 Ectocarpus siliculosus
EIM19884     383 VVSI---------------------DDh----HR----------Q-MSVLGEVGLRYSATldi 409 Wallemia mellicola CBS 633.66
EOR04614     391 IVSI---------------------DHh----HR----------Q-ISVFGEVGLRYSAIPDI 417 Wallemia ichthyophaga EXF-994
XP_003028926 376 AVHVvypevpkpaapgqategtppiEPpk-------------ptA-LTTLGPVTRHFSVTPSI 424 Schizophyllum commune H4-8
EEH59882     196 FTCI---------------------DSl----ES----------T-CTFLGQVRGRLVCVPCl 222 Micromonas pusilla CCMP1545
A0CFC2       234 CLII----------------------------NKe---------DgKCGFIKVGEKFVITPNy 259 Paramecium tetraurelia
XP_006679566 340 VTYI---------------------DQe----IN----------S-LYFLGDVQNRFVCSPSV 366 Batrachochytrium dendrobatidis J...
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