Conserved Protein Domain Family
LST1

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pfam05083: LST1 
LST-1 protein
B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia.
Statistics
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PSSM-Id: 398655
Aligned: 7 rows
Threshold Bit Score: 96.8529
Threshold Setting Gi: 0
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O00453        16 LGGLLLLAVVLLSACLCWLHRRVK-RLERSWAQgSSEQELHYASLQRLPvpsSEGPDLRGRDkrGTKEDPRADYACIAE 93  human
1_pfamImport   1 LGGFLLLVVVVLSTCLCRLHRRGEpHPHLPHLS-HSDQEPHYASLQRLP---SKVSDVGNRQrkGSKEDPSTDYACIAK 75 
XP_004781059  15 LGGLLLLAVVIVSACLCRLHRKVR-RLERSWAQ-LSEQELHYASL--LPmpsSERPDSGHRE--GTKEDTSTEYACIAK 87  domestic ferret
ELW61846      18 LGGLLLLAVVILSACLCRFRQRVT-RLERNWAQ-FRDQELHYASLQRLPgpsGEGPDLGDREe-GTKADPSSDYACIAK 93  Chinese tree shrew
O08843        24 LGGLLLLLVIILFICLCGFSQRVK-RLERN-AQ-VSGQEPHYASLQQLPvssSDITDM--------KEDLSTDYACIAR 91  house mouse
Q6MG46        42 LGGLLLLLVIILFACLCRFYQRVK-RLERN-AQ-VSGQELHYASLQKLPassSDMEGRGEGE--GVKEDASTDYACIVL 115 Norway rat
XP_004019009  49 glGVLLLLVVVLSICLCRLHRRVR-RLERSWvQ-ASKQELHYASLLRLPe--REGPDVRERE--GNKEDPSGDYACIAK 121 sheep
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