Conserved Protein Domain Family
SRP40_C

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pfam05022: SRP40_C (This model is not part of the current CDD release)
SRP40, C-terminal domain
This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologues. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.
Statistics
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PSSM-Id: 516578
Aligned: 77 rows
Threshold Bit Score: 56.7927
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002295673  531 PFKRVDDQYWGDvaTKdggAMADNSYEgafG----SDGFGVKASEKLLTVRGKDFCREKNKRKRtfngfSKSAGG--AIT 604 
Q22B41        178 MFKYLKP------------EQQDFSHEsklRfgvaGDAFGDIGNEKLKETKGKGFRKAKDKLKN-----KNFCGGdgQIN 240  Tetrahymena t...
A0BG62        124 fFQKCDETVYEKlpD----HLRDNTFEakkKfg-eGDQYGEFGNEKLKFTRGDNFKKEKGKLKN-----RQFQGMg-SIN 192  Paramecium te...
Q581A7       1134 PFQRIDPTKVAFasN----DLRDNGPK--------AEHMALRQNQEMMRVKGKSFNKLKQKNKA-----KLYASG---VD 1193 Trypanosoma b...
Q4CQQ1        367 RFQRIDPTKVVFvkD----ELRDNRPG--------GEHMAFRQNQEMMRVKGKNFNKLKQKNKA-----KFYAAG---VD 426  Trypanosoma c...
XP_001562782  180 RFQRIDPTKVTFhaD----ALRDNRPG--------EEHLVLRQNQEMMRTKGKGFNKLKQKNKG-----KFYGAG---VD 239 
CCE84668      284 HFSRINPEEISFagD----ELADNSYKgaaG------NWGEAANSRLMQVRGKDFTKNKNKMKK-----GSYKGG--KIT 346 
Q4UB82        135 PFRRIQDEVWLNriEKe--ELKVNSYKm------kNDAFGQKAAEELGSVKGKDFKSQKYKKKR-----SSWSGSg-EIT 200  Theileria ann...
Q5CRA2        164 RFKRIDENKYKEklSDe--RLNDNSYWnmkKysnnSDDFASKAAFELGQVRGKGFRQEKAKKKR-----CSWKGNg-TIS 235  Cryptosporidi...
XP_002142928  166 RFSRINDS-WNEkiTDe--RLKDNSYWnmkKynkdSSDFASKAAIELGKVRGKNFRQEKAKKKR-----CSWRGSg-NIS 236 
XP_002295673  605 MnS-FSTKY 612 
Q22B41        241 VnQiNSIpi 249  Tetrahymena thermophila SB210
A0BG62        193 LnSiNSIKl 201  Paramecium tetraurelia
Q581A7       1194 V-SvRSFQF 1201 Trypanosoma brucei
Q4CQQ1        427 T-SvRSFQF 434  Trypanosoma cruzi
XP_001562782  240 F-SvRAYQF 247 
CCE84668      347 LgT-GSFKF 354 
Q4UB82        201 S-SvNSFCF 208  Theileria annulata
Q5CRA2        236 T-GvSSIQF 243  Cryptosporidium parvum
XP_002142928  237 C-EvNSVQF 244 
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