Conserved Protein Domain Family
RNA_pol_Rpb1_R
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pfam05001: RNA_pol_Rpb1_R (This model is not part of the current CDD release)
RNA polymerase Rpb1 C-terminal repeat
The repetitive C-terminal domain (CTD) of Rpb1 (RNA polymerase Pol II) plays a critical role in the regulation of gene expression. The activity of the CTD is dependent on its state of phosphorylation.
Links
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Statistics
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PSSM-Id: 516563
Aligned: 79 rows
Threshold Bit Score: 28.6228
Created: 14-Feb-2025
Updated: 25-Apr-2025
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
EER38140       593 SPTSPalgvstgrHLSPT--SPT 613 
XP_009269141  1672 SPASP--------AYSPA--SPG 1684
O77375        2377 SPTSP--------AYSIS--SPV 2389 Plasmodium falciparum 3D7
21_pfamImport    1 SPASP--------AYGGGrtSPG 15  
16_pfamImport    1 SATSP--------AYSPGmtSPG 15  
XP_719414     1705 SPTSP--------QYSPG--SPG 1717
EDX17649       534 SPKSP--------AYSPS--SPT 546 
P24928        1826 SPSSP--------SYSPA--SPK 1838 human
13_pfamImport    1 SPTSP--------AMSPS--SPK 13  
XP_008195173  1756 SPSSP--------QYSPA--SPS 1768
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