6LQM,6LSR,6LU8


Conserved Protein Domain Family
NMD3

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pfam04981: NMD3 (This model is not part of the current CDD release)
NMD3 family
The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway.
Statistics
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PSSM-Id: 516547
Aligned: 167 rows
Threshold Bit Score: 133.184
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6LQM_3          17 CCECGVPI---SpNpANICVACLRSK-VDISQGIPKqVs---ISFCKQCQRYFqPPgTWIQ---CaLESRELLALCLKKI 86  human
WP_011838704     5 CIYCGAEDtpdNpVvEGVCLRCRIKR-GEIIEQVKReIr---VDFCKVCGAVR-IGyKWIDtngFnEALHHIVYNQLKEL 79  Staphylotherm...
WP_011822386    10 CARCGKPLt-pGdSvGPFCLDCYVEM-FKLLCVPER-Vr---FDYCKYCGAYR-IGhRWQSggeLeEAVQRFVEEVAGGV 82  Hyperthermus ...
jgi:Pyrfu_1371   9 CIRCGRRIaasEpViDGMCLECFLEE-RKLVEIPGR-Ld---FEYCRSCGAIR-YGyRWVEqlpLeEASRRYLELYLSER 82 
Q9Y9F4         139 CASCGRGS---EvLlRGLCPECFDRR-YGVVEGLPWeLv---VDVCTSCGRVR-IGhKWLEyatAeEAVGLMLSSMSLKP 210 Aeropyrum pernix
17_pfamImport    1 CPICGREEsknLpFvGGICVECYLNK-N------PLeIkaitLNKCKICGKIR-YKnDWi------FANENFYSEIFAKE 66 
Q8ZWR6          11 CPFCGRLV---DrLiEGMCEDCYVER-HPLVKVKE--Tr---VLRCRYCGALF-IRgRWi------REGRGGVEELAAKV 74  Pyrobaculum a...
WP_014737069     4 CLNCGREVs-dEdYvNGYCIDCFRKIgNPFTK--QVsLe---LKVCSRCGSIF-YKgEW---------HQDSMENIVRRY 67  Thermogladius...
WP_013129831     4 CVRCGKEVs-dEeIvGNYCVDCYVKH-LTPFKDKPR-Le---VMVCPKCGAWF-YKgEWNHp--L--EENEVLRRIAIWG 72  Thermosphaera...
WP_011839391     5 CVRCGRRVsedEpLiNGYCIDCYLKY-KGIFVTKPV-Ln---ITICPRCGSWM-YRgEWRDp--L--PLREIIRRILISE 74  Staphylotherm...
6LQM_3          87 kap--------------lsKV-RlVDAGfvwTEPhSKRLKVKLTIQKEV----M-NGailqQVFVVDYVVQS------QM 140 human
WP_011838704    80 vkpgig-------vddlriDGyElVTSA-------SWRTVVRVYFRGIYggk------efvYPLDFIVYLNP------TK 133 Staphylotherm...
WP_011822386    83 kpcrpe-------vrgfsvEGvEpLTKPswrTIY-------AIRYSIQVq----gVDkpisQTYRVEVRASP------TI 138 Hyperthermus ...
jgi:Pyrfu_1371  83 vkpahal------vedvkiVNiEpLQYPswrSVY-------RVVVEARLk----gVEepvrQEYVVEVRAVP------SL 139
Q9Y9F4         211 v---------------------HpVERVeleDWAlETRLDWRTRVRLRFr--aNyRDtlfrVSRVIVLRLNP------ST 261 Aeropyrum pernix
17_pfamImport   67 veknnkkkfiqfgldlkavPY-KeKVLVtvqNEIgKYET-----------------------------YLDPiidykfTI 116
Q8ZWR6          75 lsdkasv-----sgaieriEA-SqSYDG---LTA-------RVVVKGSPh--pSiEPrl--fTYVLTFEYVY------DI 128 Pyrobaculum a...
WP_014737069    68 lldnqa--------kymiaSA-ElISVEpsgEPReSAK---GVYVQNWLfgivLnKKhfvqFNQDVRISVSR------TI 129 Thermogladius...
WP_013129831    73 skrflr-------eevevlDV-SvVKSLhkiSASeHGV---TLNYQLLIk-----gIhpvnFELEVPVRITY------KP 130 Thermosphaera...
WP_011839391    75 ayrfidr------qhvnllDA-TiLSEPykiNES-QYAVKALLHVVIE-------EYyplnLEKEIVLNINR------KV 133 Staphylotherm...
6LQM_3         141 CGDCHRVEAKdFWKAVIQVRQK------TLHKKTFYYLEQLI--LKyG-MHQNTLRIKEIHDGLDFYYSSKQHAQKMVEF 211 human
WP_011838704   134 CPRCKMIESG-EFEAVVQIRDV-------HVKDLEKALEKIF--SRdKrLRQDLVDYIEVKNGIDIYFYNHGAARKLSRK 203 Staphylotherm...
WP_011822386   139 CPTCKDVRGG-EYNVLLQVRGI-------KPAELARLLGPLL--DSsEqIQNSIVDIVEYNNGVDFLLLDRGSAAKIIKE 208 Hyperthermus ...
jgi:Pyrfu_1371 140 CPACKNDRGG-DYNVLVQVRGR-------IDAKLVEVLGRIL---DsGrVAPWVVDIIEDKRGIDILLRDRGAASRIVSE 208
Q9Y9F4         262 CPLCIVRRSG-EYDTLVQVRGY----------RAGEAVEKTL--NSlD-PREAPIDVVPVRGGVDVYFHHRGAAARFVSR 327 Aeropyrum pernix
17_pfamImport  117 CPQCLARKAG-SYDSVIQIRGTnkl-dfEDKKIIMNLIEKLPy----D-LKQHIVTITENKDWIDVEIVGHEKARLIASF 189
Q8ZWR6         129 CNSCREMLSR-REVAVLQIRGYprgienDVKKKIIFIIEQELykLKdK-KIGFISDIKDLKNGIDIYTTNANLARHLAYV 206 Pyrobaculum a...
WP_014737069   130 CPRCLARASR-KISAVVQVRGV-------NAQAHRGLVEGVI--MSnPgYSEYLVDVEDAPNGFDIRFVDQLPARRLAYE 199 Thermogladius...
WP_013129831   131 CPSCLARAGG-SHKALVQVRVEgevdieELAEEVEELLVKAG-------LSSSVTEVEVVKEGVDVKFEDPVAARKLSSI 202 Thermosphaera...
WP_011839391   134 CPKCLAYAGK-SHRALVQIRSVngsfsrEEEKIINKAISDPG-------VAGDIVEIKKNKYGLDVKLLTSVAAKRLSTI 205 Staphylotherm...
6LQM_3         212 LQCTVPCRY-KASQRLISQDIHSNTYNYKSTFSVEI 246 human
WP_011838704   204 LSNMLGLVI-KENYEVAGM-RS-GKQRARLYVSLKp 236 Staphylothermus marinus
WP_011822386   209 IKKKYIVVT-RTTGEDVGITST-GHMRRRTVIAVRV 242 Hyperthermus butylicus
jgi:Pyrfu_1371 209 LSKYFVVDV-KRSAETVGMTST-GIERRRLTISVRV 242
Q9Y9F4         328 LASTARVRVsRVEHEHVGTSSL-GRRRSRKTILVRL 362 Aeropyrum pernix
17_pfamImport  190 LSEKLGGET-KQTFKLIST-KK-GERNSRLTISLRI 222
Q8ZWR6         207 IHRQFPSVV-TETAKVVGV-KD-GRKIYHMTYSVRI 239 Pyrobaculum aerophilum
WP_014737069   200 LARLLGGHV-KETFKSTRYDARKGVWQGIHTFSVRL 234 Thermogladius calderae
WP_013129831   203 LSRKYGAST-AESFRSTRFDAHEGKWRGVVTLSVRI 237 Thermosphaera aggregans
WP_011839391   206 LSRLTGAKI-IESFKPVRYNPDKGRWSGITTLSVRL 240 Staphylothermus marinus
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