6ZMT,6ZN5,7MQ9


Conserved Protein Domain Family
RIBIOP_C

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pfam04950: RIBIOP_C (This model is not part of the current CDD release)
40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
RIBIOP_C is a family of eukaryotic proteins from the C-terminus of pre-rRNA-processing protein or ribosome biogenesis proteins BMS1 and TSR1. These proteins act, in the nucleolus, as a molecular switch during maturation of the 40S ribosomal subunit. This domain, domain IV of translation elongation factor selb, adopts the same fold as translation proteins such as domain II of GTP-elongation factor Tu proteins.
Statistics
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PSSM-Id: 516527
Aligned: 176 rows
Threshold Bit Score: 178.43
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6ZMT_u        488 VDTPRDVAARIRFQKYRGLKSFRTSPWDPKEN---LPQDYARIFQFQNFTNTRKSIFK-----EVEEkeve--------- 550  human
XP_002426897  757 VEKPNEDKKETLIEKKKKLKKKFDAEYDDK--------------EEYSYYDDLKAQMDq---qAQINksefdgladd--l 817 
XP_012059184  778 LPVNEVEDKKKLLEKKKKLKEQFNAEYDNT--------------EKKTYYDELKDEVEr---qAGINksefeglddd--i 838 
XP_008196698  784 VEKDEEADRQALAEKKRKLKEKFDEEYDNTEK---SSYYDDLKQSAEKQAQLNKTVFEn----MADDvrvqi-------- 848 
EDS44572      271 RIEEKNMSRTELMAKKMKLKAKFDSEYDNP-----EKDDQHIEGDH-KYYEKLKADALr---qSELNkkefsnlded--i 339 
Q9VVC9        685 RVEEENLTKAELMAKKLKLKAKFDAEYDNSGEgkgEEDNGRITGDH-SFYEDLKAEAQr---qSELNksefahldne--f 758  fruit fly
XP_002635477  582 ESEADKTRKQKRLEAKIKLKQRFNDDY----------------DETCKFYNKAKNELTe---qADLNrqvfegmdee--e 640 
XP_001470226  786 QGGSLTEEQERLLQKKMAKKRAFDQDYd-------TGNVDGGKNTTFSYYHRLNRQVEe---kKERInealddvgddmdk 855 
Q384C0        744 GGKPLTEEQERLLQKRMAKKKAFNELYd-------M----GGKNNTYSHYHEMTREVEa---kKERLdtalqevghditn 809  Trypanosoma b...
XP_002681065  781 NDDILDELQKKRMEKKKSFDAQFDEKK-SSDKkegSAGVEEEEEDPITTIEKLKKKLReddpqMILNktefqnltre--q 857 
6ZMT_u        551 -----gaevGWYVTLHVSEVPVSvvecFRQgt----pLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFR 621  human
XP_002426897  818 rvelegyrpGMYIRIELGNVPCE----FVQnfdptypLIVGGLLPIEENIGYIQVRLKKHRWYGKILKTKDPLIVSLGWR 893 
XP_012059184  839 rvqlegyrpGMYIRVEIEAVPCE----LIThldptypIIIGGLLHGEENIGYVQMRIKKHRWYSRILKSRDPLIFSIGWR 914 
XP_008196698  849 ----egfrpGMYVRIEIRDVPAE----FVTnfnptypLIVGALNMGEENIGYVNVKIKKHRWYSKILKTGDPLIVSLGWR 920 
EDS44572      340 rlniegyraGLYVRMNFTNVPYE----FVEhfdpafpVLIGGLNMAEENVGFVSCKVKKHRWYKKILKAGDPLIISLGWR 415 
Q9VVC9        759 riqiegyrpGLYVRLGFKQLPAE----FIEnfdasypVLVGALNMTEENVGYVNCKVKKHRWYKKILKTGDPLIISMGWR 834  fruit fly
XP_002635477  641 rekiegfraGRYVRIEIESVPCE----FVShfdatapYIIGGLLPGEQNMGVVQARVKRHRWFERTLKSRDPLIISCGWR 716 
XP_001470226  856 kiqlvgyfsGLYLRIVIDSVPVE----FLKafdpavpLIAGGINAGEDEFRIVQARIKRHRWFPKILKAQDPLLLSMGWR 931 
Q384C0        810 kiklvghfsGLYVRFVLENVPVE----FVQlfdpsvpIIAGGVNAGEDQFQVVHAKLKRHRWFPKILKAQDPLLLSMGWR 885  Trypanosoma b...
XP_002681065  858 reeiegispGSYVRLEINSFPTE----FIEnvnfknpIIVGGMHPEECRMGLIKMRMKRHRWYPRTLKNKDPLVFSIGWR 933 
6ZMT_u        622 RFRASPLFSQHTaaDKHKLQRFLtADMA-LVATVYAPITFPPASVLLFK------QkSN--GMHSLIATGHLMSVDPDRM 692  human
XP_002426897  894 RFQTLLVYSKLEdnMRQRMLKYT-PEHVsCMGHFFGPITPQGTGFLAIQ------DvANrtPGFRIACTGAVVEIDKSVS 966 
XP_012059184  915 RFQSLPIYSKLEdnLRHRMLKYT-PEHVaCMSHLWGPITPQGTGVLAVQ------DvASkePGFRIVATGSIVELNKSTE 987 
XP_008196698  921 RFQTLPIYSKLEddLKFRYLKYT-PEHLaCNAHFWGPITPQGSGFVALQsvasnpEiLKk-QGFRIAATGVVQELDKSTQ 998 
EDS44572      416 RFQTIPIFAKVEddLKHRYLKYT-PNHVtCSMTFWGPITPQNTGVLAIQsia-ydPqETkrLGFRVAATGAVSESDKSAQ 493 
Q9VVC9        835 RFQTVAIYAKVEdnFRQRYLKYT-PNHVtCSMTFWGPITPQNTGFLALQtvr-qdQeEMrrLGFRIAATGCVTEVDKSSQ 912  fruit fly
XP_002635477  717 RFQTLAIYSVQDhnMRLRFLKYT-PEHMhCHASFFGPICAQNTGLLAIQ------SiADktPGYRIVATGGVLDLDKSTQ 789 
XP_001470226  932 RFQTQPIFSTEDpnGRCRYLKYT-PLHMhCMAAFYAPVAPPNTGFLAIP------VrDPrvSSFRIPCTGYTIGNDVSTP 1004
Q384C0        886 RFQTQPILATEDpnGRMRYLKYT-PMHMhCAAAFYAPVAPANTGFVAIP------VrEQrsPNFRISCTGYTVGNDLASN 958  Trypanosoma b...
XP_002681065  934 RFQSIPTYCMQDdnGRHRQIKYT-PEYMhCIAAIYGPFVPQNTGVIAFQ------TlSEkvDTFRVSATGYVMEMDQDFS 1006
6ZMT_u        693 VIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPL----GT-HGHMKCSFDGKLKSQDTVLM 767  human
XP_002426897  967 VVKKLKLVGTPLKIYNKTAFIQGMFNTVLEVGKFEGAKIRTVSGIRGQIKKAV----GKpEGVFRATFEDKIKLSDIVFC 1042
XP_012059184  988 VMKKLKLIGLPMKIHRKTAFIKDMFNSALEVAKFEGARIKTVSGIRGQIKKAI----SKpEGCFRATFEDKIMLSDIVFC 1063
XP_008196698  999 IMKKLKLVGHPLKIYKKTAFIKGMFNTALEVAKFEGARIKTVSGIRGQIKKAV----NKpEGCFRATFEDKILLSDIVFC 1074
EDS44572      494 IMKKLKLIGTPYKIYNKTAFIQGMFNSTLEVAKFEGAKIKTVSGIRGQIKKAV-----PpDGSFRATFEDRIVLSDIVFC 568 
Q9VVC9        913 IMKKLKLVGHPFKIYKKTAFVKDMFNSSLEVAKFEGAKIKTVSGIRGQIKKAH----HTpEGSYRATFEDKILLSDIVFC 988  fruit fly
XP_002635477  790 VVKKLKLIGTPEKIFKKTAFVKGMFNSPLEVAKFEGATIRTVAGIRGQIKKAI----KApAGAFRATFEDKILMRDIVFL 865 
XP_001470226 1005 IVKKLKLTGTPAKVEKTTAFIKGMFSSDVEAAKFIGAKLRTVSGIRGIIKSVM----KGkQGLVRATFEDKLFPSDIVFI 1080
Q384C0        959 IVKKLKLIGTPQKIMKTTAFIKGMFNSDLEAAKYVGAKLKTVAGIRGIVKTVL----KGkNGLIRATFEDKIFPSDIVFC 1034 Trypanosoma b...
XP_002681065 1007 IVKKLKLLGYPKIVHKNTCIVTKMFTSDLEVAKYEGASLRTVSGLRGSVKKPFrgdkASp-GDFRATFEDKLIRGDIIFL 1085
6ZMT_u        768 NLYKRVFP 775  human
XP_002426897 1043 RTWYSVDV 1050
XP_012059184 1064 RTWYKIDV 1071
XP_008196698 1075 RTWYKVDV 1082
EDS44572      569 RTWFKVTV 576 
Q9VVC9        989 RTWFRVEV 996  fruit fly
XP_002635477  866 RSWVTVPI 873 
XP_001470226 1081 SAWKSVEP 1088
Q384C0       1035 RAWKMVEP 1042 Trypanosoma brucei
XP_002681065 1086 RCWYALEL 1093
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